| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_5393 |
|---|
| Symbol | |
|---|
| ID | 8547805 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 7411880 |
|---|
| End bp | 7412764 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 646390066 |
|---|
| Product | ABC transporter related protein |
|---|
| Protein accession | YP_003269770 |
|---|
| Protein GI | 262198561 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.802054 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.157485 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTGCGA CCGATCGTCC GAATACGGAT GCGGAGCCGA GCGGGGCGCC GTTCTTGGCG
ATCGAGGGCG TCTACAGCTA CTACGGCAAC ATCGCGGCCC TGCGCGGCGT CGATCTCACG
GTCGAGCGCG GCGAGATCGT GACCCTCATC GGCGCCAATG GCGCCGGCAA ATCGACGCTG
CTGATGACCG TCTTCGGCAA GCCGCGGGCC ACACGCGGGC GCATCCTGTT CGACGGCGAG
GACATCACCC GGGCGCGCAC GCACGAGCTG GTCCACCGCG GCATCGCCCA GAGCCCGGAG
GGGCGGCGCA TCTTCCCCCG CATGAGCGTG CTCGAGAACC TGCAGATGGG CGCGATTCCC
GCGCCGCGCG AGCACTTCGA GGCCGACCTC GAGCGGGTCT TCGAGCTGTT CCCGGTGCTG
GCCCAGCGCA GGCGGCAGCG CGGCGGCACG CTCTCGGGCG GCGAGCAGCA GATGCTGGCC
ATCGGCCGGG CGCTGATGAG CCGGCCGCGT CTGCTGCTGC TCGACGAGCC CTCGCTGGGG
CTGGCGCCGC TGATCGTCAA GCGCATCTTC GAGGTGCTGC GCGAGCTCAA CCAGCGCGAG
CGCATGACCA TCTTCCTGGT CGAGCAGAAC GCCTACCACG CGCTCAAGCT GGCCCATCGC
GGCTACGTGC TGGTCAACGG TGAGATCGTG CTCAGCGGCG GCGGCCGCGA GCTGCTGGCC
ATGCCCGAGG TGCGGGCCGC GTATCTCGAG GGCAGCGCGC GGCCGAGCGA TGTCGTCGAG
GCGTCCGAAA CCGACGCCGG AGAGAAACCG GGCAGCGACG CGCGTACCGC CCCGGCCCCG
GCCCCGGGCG GGGACGCGGA CGCGGACGCG GAGACCACGC CGTGA
|
|---|
| Protein sequence | MSATDRPNTD AEPSGAPFLA IEGVYSYYGN IAALRGVDLT VERGEIVTLI GANGAGKSTL
LMTVFGKPRA TRGRILFDGE DITRARTHEL VHRGIAQSPE GRRIFPRMSV LENLQMGAIP
APREHFEADL ERVFELFPVL AQRRRQRGGT LSGGEQQMLA IGRALMSRPR LLLLDEPSLG
LAPLIVKRIF EVLRELNQRE RMTIFLVEQN AYHALKLAHR GYVLVNGEIV LSGGGRELLA
MPEVRAAYLE GSARPSDVVE ASETDAGEKP GSDARTAPAP APGGDADADA ETTP
|
|---|
| |