Gene Hoch_5380 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_5380 
Symbol 
ID8547792 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp7397379 
End bp7398347 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content69% 
IMG OID646390053 
ProductABC transporter related protein 
Protein accessionYP_003269757 
Protein GI262198548 
COG category[V] Defense mechanisms 
COG ID[COG1131] ABC-type multidrug transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0478769 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.847068 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAGCTA TCGAGACCAG CGGGCTGAGC AAGTCCTACG GCGACGTCCG GGCGCTTCGC 
GATGTGTCCT TCTCGATCGA GAAGGGCGAG ATCATCGGTC TGCTCGGTCC CAACGGCGCG
GGCAAGACCA CGCTGATGAA GATCCTCACC GGCTACATGC AGGCCGACGA AGGTCAGGCG
CAGGTTGCCG GCATCGACGT CGCCGACGAT CCCCTGGGCG TGCAGGCGCG CATCGGTTAT
CTGCCCGAGA ATGCGCCCGT ATACCGCGAC ATGACGGTGC GCGAGTACCT GATCATGATG
GCCGAGCTGC GCGACCTGCC GGGCGAGAAG CTGGGCGGGC TCATCGGCGA GGCCATCGAG
GCCACCGGCC TGGGCGGCTA CGTCGATCGC CTCATCGGCA ATCTGTCCAA AGGCTACCGC
CAGCGCGTGG GTCTGGCCCA GGCGCTGCTG CATCAGCCCG AGCTGCTGAT CCTCGACGAG
CCCACCACCG GACTCGACCC CACGCAGATC GTCGAGATCC GCGAGCTCAT CAAGAACCTG
TCCAAGCGGT CGACCATCCT GCTCTCGACC CACATCCTGC CCGAGGTCGA GATGACCTGC
GAGCGGGTGC TGATCATCAT CCGCGGCCAG CTCCGCGCCG ACGCCAAGCT CGAGGAGCTG
CGCGCGGCCA ACGCGGCCAT CGTCGCCATC GAGGAGCAGG ACGACGCCGG CGAGGTCGAG
CGCGCGCTGC GCGGCATCGA GGGCGTGGAC GGCGTGGAGC AGCGCGAGGC GGCCGGTGGC
TTTCGCCGCT GGCGGGTGAC CAGCGACAGC AATGACGCGC TGTGCCCGGC GGTGTTCGAC
CTGATGCGCG AGCGCGCCTG GCGGGTCTCG GAGCTGCGTT CGGACGCGCG TACGCTCGAG
ACCGTGTTTC GCGAACTCGC CAACGCGCCC AGCGCCGCGG CCGTCGCCTC CGAGGAGGTT
CGCCCGTGA
 
Protein sequence
MRAIETSGLS KSYGDVRALR DVSFSIEKGE IIGLLGPNGA GKTTLMKILT GYMQADEGQA 
QVAGIDVADD PLGVQARIGY LPENAPVYRD MTVREYLIMM AELRDLPGEK LGGLIGEAIE
ATGLGGYVDR LIGNLSKGYR QRVGLAQALL HQPELLILDE PTTGLDPTQI VEIRELIKNL
SKRSTILLST HILPEVEMTC ERVLIIIRGQ LRADAKLEEL RAANAAIVAI EEQDDAGEVE
RALRGIEGVD GVEQREAAGG FRRWRVTSDS NDALCPAVFD LMRERAWRVS ELRSDARTLE
TVFRELANAP SAAAVASEEV RP