| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_5340 |
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| Symbol | |
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| ID | 8547752 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | + |
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| Start bp | 7346768 |
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| End bp | 7347430 |
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| Gene Length | 663 bp |
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| Protein Length | 220 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 646390013 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_003269717 |
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| Protein GI | 262198508 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.299796 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGTGAGCC GACGAAAACG GCGGAGCGAG TTCGAGAAAC TCGCCATCCC CCACACCGAC
GCCCTCTTTG GCGCCGCGTT TCGCATGACG CGCAGCCAGC AGGGCGCCGA GGACCTGGTC
CAGGAGACCA TGCTGCGCGC GTATCGCTTC TGGGATACCT TCCAGCAGGA CTCCAACTGC
AAGGCCTGGC TGTTTCGCAT CCTCACCAAC ACCTTCATCA ACTCCTACCA GAAGAACAAG
CGCAGCCGCG AGGTGCTCGA CGCCGCTCAC AACGAGCAGC GCGCCACCGA CGGCATCCTG
GTCCACGAGC GCGCGCTCGA CCTGCGCAAC CCCGAAGAGC TGCTGCTCTC GCAGACCCTG
TCGGACGATG TCGTCCGCGC CCTCGAGTCG CTGCCGGCCG ATTTTCGCGT CGCCGTGGTG
CTGTGTGATG TCGAGGGCTT CTCCTATAAA GAAATCGCCG AGATTCTCGA ATGCCCCGTG
GGCACGGTGA TGAGCCGCCT CCATCGCGGC CGTCGCCTGC TCCAGGCAGC CCTCTACGAC
TTCGCGGTCG AGCAGGGCGT CATCAAACCC AAACCTCCGG CTGAAACACC TGAGGCAGAG
GCCCCCGAGG GGTCGGACGC GGGCACCATC GACTTGAGCG AGTACCGCAA GAAAAAGGGC
TGA
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| Protein sequence | MVSRRKRRSE FEKLAIPHTD ALFGAAFRMT RSQQGAEDLV QETMLRAYRF WDTFQQDSNC
KAWLFRILTN TFINSYQKNK RSREVLDAAH NEQRATDGIL VHERALDLRN PEELLLSQTL
SDDVVRALES LPADFRVAVV LCDVEGFSYK EIAEILECPV GTVMSRLHRG RRLLQAALYD
FAVEQGVIKP KPPAETPEAE APEGSDAGTI DLSEYRKKKG
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