| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_5248 |
|---|
| Symbol | |
|---|
| ID | 8547660 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 7211781 |
|---|
| End bp | 7212353 |
|---|
| Gene Length | 573 bp |
|---|
| Protein Length | 190 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 646389922 |
|---|
| Product | Appr-1-p processing domain protein |
|---|
| Protein accession | YP_003269626 |
|---|
| Protein GI | 262198417 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2110] Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.761062 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGCAA GCGACGATGG CACGATTGCC ATCATGTCCC CCTTTGCGAG CGAGCCCAGC
GAGCGGATCG AGGTCCGTGA GGACGACATC ACCACACTCG CGCTCGACGC CATCGTCAAC
GCCGCCAATA GCAGCTTGCT GGGCGGTGGC GGCGTGGACG GCGCCATCCA CCGCGCCGCC
GGGCCCGCGC TGCTGGCCGC CTGTCGCCCG CTCGGCGGCT GCGCCACCGG CGCCGCCAAG
ATCACGCCCG GCTTCGAGCT GCCCGCGCGT CAGGTCATTC ATACGGTCGG GCCAGTGTGG
CGCGGCGGCG GCGAGGGCGA GCCCGAATTG CTGGCCTCGT GCTATCGCGC GTGCATGGCG
CTGGCGCGCG AGCACGGGCT GCGCACGCTC GCGTTCCCCG CCATCTCCAC CGGCGTCTAC
GGCTATCCGC TGGAGCCGGC GACCAGCGTC GCCGTGAGCA CGGTGCGCGA GCAGTTGCGC
GCCTCTCCGA CCATCACCCA GGTCGTCTTC TGCTGCTTCA GCGCCCGCGC GCGCCAGGTC
TACGAGCGCA CGCTGGCCGC GCAAGCGCGC TGA
|
|---|
| Protein sequence | MEASDDGTIA IMSPFASEPS ERIEVREDDI TTLALDAIVN AANSSLLGGG GVDGAIHRAA
GPALLAACRP LGGCATGAAK ITPGFELPAR QVIHTVGPVW RGGGEGEPEL LASCYRACMA
LAREHGLRTL AFPAISTGVY GYPLEPATSV AVSTVREQLR ASPTITQVVF CCFSARARQV
YERTLAAQAR
|
|---|
| |