| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_5246 |
|---|
| Symbol | |
|---|
| ID | 8547658 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 7208820 |
|---|
| End bp | 7210946 |
|---|
| Gene Length | 2127 bp |
|---|
| Protein Length | 708 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 646389920 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003269624 |
|---|
| Protein GI | 262198415 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5271] AAA ATPase containing von Willebrand factor type A (vWA) domain |
|---|
| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.733129 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCTCGCA CTCGGCGACA TCGCAACTCC CCCTGGCTGC TGCTCCTGGC CCTGGCCTCC
TCGCTGGCCG GACACCTCGG CAGCGTCGCC GTGTACGAGG CCACGCGGCC GCCGCCGCCG
CACATGCTGC GCGTGCACAT CGACGGCCGC GGCGCCGGCG TGGTCAGCTC CGCGCCCGCC
GGCATGCGCT GCACGCGCGA CTGCGCCGCG CCCTGGGCGC CGGGAAGCAG CATCGAGTTG
CAGGCTAAGC CCGACGACAC CAGCACATTC CTGGGCTGGA GCGGCGACTG CGAGCCGGTG
CCCGAGCGCG TGCTGGCCTG CCGTCTGGTG CTCGACGCCG ACGCCGAGGT CACGCTCGGC
TTTGGCCGCA TGCCGCGCGA GGTCGAGGTC GCCTGGGTGG ATTCGGACGA GCTGCCCGAG
AGCGAGGAGC AGCCCGTCGA GCTGCGCCTG CCCGACCCCG ACATCGAAGC CGAGATGCTG
ATCGAGCCGC TGGCCGAGAT CCTGCCCGAG GCCGTGCCCG AGCCGCCGCC GCCCGAGCTG
CCGCCGCCGC CGCCCGAGCA GCAGCCGCCC GCGCCGCCGC CGCCCGAGAT GGCCAACATG
CGCAGCGTCG AGGTGCCGGA CGAGAACGAG GTCGAAGAGG CGCCCGACGA CGCCACCCAC
CTGTCCGACA AGAACCGCGA CGTCGCCGAG GAGACGCGCG CCGAGGACAC CAACCTCGAC
CGCCAGCAGA GCGGCGAGGC CCAGGCCTCG GCGCCGAGCG AGGTCGACAG CGAGGAGATC
GGCGTCGAGG AGGACACCAT CGCCGAGCTC GAGGAGACCG ACCCGAGCAC GCTCGAGGAC
GTGCGCGAGG AGCCCGCGGC CACCGGCGAG AGCGAGCGCG CGGTGGGCGC GCTGGCCGGT
GAGCAGGGCG AGGACGGCGA GGACGGCGAG GCCGGCGACG GCACCGAGGC CCCCGAGCCC
GGCATGCTGG CGATGCGCGG CATCGCCGGC CGCGGCGCCC TGGTGGCCAG CGAGGACCGC
AGCGGACGCG GCGGCGAGCA GGGCAAACGC GGCACCCCCG GCCTGCCCGG CATCAACACC
GCGCTCGACG CCGACGCCTA CGAGCGCATC GTCGGCGAGG ACAAGGCCGC CGAGGAGGTC
GAGCTCGGGC GCCGGCGCAT GTCGGGCAAA CGCGGCCGCT TCGCGCGCAA GCAGGAGGCC
ATCCGCTCGG CGCTGGAGAA CTTCACCCCC GAGGTGCGCA CCGGCAACCA GACCGCGCTC
AAGACCCGGG CCGCGCCCTT CGCCGTGTTC ATCGCCCGCA TGCACCGCGA GATTCACCCG
CTGTGGGGCT TCGGCTTCAT CGAGGACCTC AACGACCGAC CCGGCAACGA CCCGCTCAAC
GACTGGAACC TGATGACCAC GCTCGAGATC GTGGTCAACA GCGACGGCAC CGTGCACAAG
GTCAACATCG TGCGCAACTC GGGGCGCCTC GAGTTCGACG TCGCCGCCAT CGACACCGTG
CTCACGGCCG GCCCCTACGA GCCGCCGCCG CCCGCCATCC GCTCGCCCGA CGGCCGCGCC
TACGTGCACT GGGGCTTCTA TCGCAACTAC CGCCAGTGCG GCACCTTCAA CGCCCAGCCC
TTCATCCTCA GCGAGGCGCC CGAGGAAGAC CCCGACGTGC TCTCGGACAG CGACATGGTG
CGGCGCATGG CGCCGAGCCG GCGCCAGAAG CTGCTCGACC AGGCGCGCAC GCCCGAGGGC
CCGGCCCAGA GCGGCGACGA AGACCCCGCG GCCACGCACG TCGCCAACCT GTGGATGACC
GGCTACGCCC AGGGCAACGT CGCCCGCATG GTGCAGATGA GCGCCACGCC CTTCCGCGTC
GCCGGCGGTA ATGTGGCCTC CAGCGGCGAG CTCAGCGCCC TGTATCAGCG CGTGCGCCGC
GAGGTCGGCG GCATGCGCGA CTGGAAGATG ATGTCGCCGG CCGGCTACCG GCAGCGCTTT
GGCAGCCTGC CGGAGGGACT CGAGGCCGGT GAGCAGCAGC TCCTGGCCGT GGTCCTCGGC
GGCAAGGGCC GCTTTGCGCT GGCCCTGGAG CGGCGCGGCG ACGACTACAA GGTCGTCGGC
CTGTTTGTGT CTGCGAACGG CGAGTGA
|
|---|
| Protein sequence | MARTRRHRNS PWLLLLALAS SLAGHLGSVA VYEATRPPPP HMLRVHIDGR GAGVVSSAPA
GMRCTRDCAA PWAPGSSIEL QAKPDDTSTF LGWSGDCEPV PERVLACRLV LDADAEVTLG
FGRMPREVEV AWVDSDELPE SEEQPVELRL PDPDIEAEML IEPLAEILPE AVPEPPPPEL
PPPPPEQQPP APPPPEMANM RSVEVPDENE VEEAPDDATH LSDKNRDVAE ETRAEDTNLD
RQQSGEAQAS APSEVDSEEI GVEEDTIAEL EETDPSTLED VREEPAATGE SERAVGALAG
EQGEDGEDGE AGDGTEAPEP GMLAMRGIAG RGALVASEDR SGRGGEQGKR GTPGLPGINT
ALDADAYERI VGEDKAAEEV ELGRRRMSGK RGRFARKQEA IRSALENFTP EVRTGNQTAL
KTRAAPFAVF IARMHREIHP LWGFGFIEDL NDRPGNDPLN DWNLMTTLEI VVNSDGTVHK
VNIVRNSGRL EFDVAAIDTV LTAGPYEPPP PAIRSPDGRA YVHWGFYRNY RQCGTFNAQP
FILSEAPEED PDVLSDSDMV RRMAPSRRQK LLDQARTPEG PAQSGDEDPA ATHVANLWMT
GYAQGNVARM VQMSATPFRV AGGNVASSGE LSALYQRVRR EVGGMRDWKM MSPAGYRQRF
GSLPEGLEAG EQQLLAVVLG GKGRFALALE RRGDDYKVVG LFVSANGE
|
|---|
| |