Gene Hoch_5238 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_5238 
Symbol 
ID8547650 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp7195416 
End bp7196387 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content70% 
IMG OID646389912 
ProductNAD-dependent epimerase/dehydratase 
Protein accessionYP_003269616 
Protein GI262198407 
COG category[G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0451] Nucleoside-diphosphate-sugar epimerases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.29276 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTTCTG GTGAGCGCGG GGCGAGCGCG GGCGCCACGC CCGAGCGCCG CAAGGTAGTC 
ATCACCGGCA TCGCCGGACG CCTGGGCCAC ATCGTCACCC AGATGCTGCA TCGCGATGAC
GGTTACCAGG TGGTCGGACT CGACCGTCGG CCCTTCCGCG ACAAACCCCG CGACGTCGAG
CACCATCAGT TCGACCTGCG CTCCAAGCGC ACGCGCGAGC TCTTCCGCCG CGGCGACGTC
TACGCGCTCC TGCACCTGGG CGTGCTGCAC GCGCCGCGGG CCACGGACCG CGAACTCTAC
GAGTGGAACG TGGGCGGGAC CGCGCGGCTG CTCGAGTACT GCATGGCCTA CGAGGTGCCC
AAGGTCATCC TCGTGTCCTC GGCCAACGTC TACGGGCCGC GGCCCGAGAA CACCCAGTTC
CTCACGGAAG AGTCGCCGCT GCTCGCGGCC CAGGCCTTCC CGCGCATGCG CAACCTGGTG
GAACTCGACC ACATGGGCGC GTCCTTCTTC TGGCGGGCGC GCGACATCGA GACCGTGATC
CTGCGGCCGG TGCACATCCT CGGCCGGGTG CGCAACGCGC CCTCGAACTA CCTGCGCCTC
GATCCTATCC CCACCCTGCT CGGTTTCGAT CCCATGATCC AGGCGGTGCA CGAGCGCGAT
GTGGCCCGCG CCATCGGCCG CGCGCTCGAG CCCGGCGCGC GCGGCATCTA CAACATCACC
GGCCCGGGCG AGCTGCCGCT GTCCGAGATC GCGCAGGAGC TCGGCCGGCG CACCATCCCG
ATCCCGCACC CGCTGGCCAA GCCGCTGTGG TCGCTGGCCT TCCGCCTGGG CATGTCGAGC
TACCTGGTCG ATGAGTTCGA CTTCATCCGC TACGTGTGCA TGGTCGACGG CAGCCGCGCC
CGCACCGAGC TCGGCTTCCA GCCGCACTAC TCGCTGCGCG AGACCATCCA CGCGGTGATG
GCCAGCGCCT GA
 
Protein sequence
MSSGERGASA GATPERRKVV ITGIAGRLGH IVTQMLHRDD GYQVVGLDRR PFRDKPRDVE 
HHQFDLRSKR TRELFRRGDV YALLHLGVLH APRATDRELY EWNVGGTARL LEYCMAYEVP
KVILVSSANV YGPRPENTQF LTEESPLLAA QAFPRMRNLV ELDHMGASFF WRARDIETVI
LRPVHILGRV RNAPSNYLRL DPIPTLLGFD PMIQAVHERD VARAIGRALE PGARGIYNIT
GPGELPLSEI AQELGRRTIP IPHPLAKPLW SLAFRLGMSS YLVDEFDFIR YVCMVDGSRA
RTELGFQPHY SLRETIHAVM ASA