Gene Hoch_5158 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_5158 
Symbol 
ID8547569 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp7105583 
End bp7106179 
Gene Length597 bp 
Protein Length198 aa 
Translation table11 
GC content62% 
IMG OID646389834 
Producttranscriptional regulator, XRE family 
Protein accessionYP_003269539 
Protein GI262198330 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.503819 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.690311 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCAGCAGC TCAGTATCCT TGTCGTCGAT GACGACAAGG ACGTCTGCGA GTACTTGCAG 
GACTTCCTCT CTTCCGAGGG GTATCGCGTC AGCATCGTCA ACGATCCGAC CAACGCCCTC
GAGGCGCTGA GGCAGTCGGA GTACCACGTC GTGGTGCTCG ACATCATGAT GCCGAAGCTC
AACGGCATCG ACCTGCTCGA GCAGATTCGC CAGTCGGACG ACGACATCGC CGTCATCATC
TTGACCGGGT ATCCGAGCCT GGAGACCGCG ACCTCGTCGA TCGAGCACGA CGTCTCGGCC
TACATTCGCA AGCCCTTCAC GATCGCCGAA TTCCGCGAGG CGATTCAGCG CATCGCCAAG
AAGAAGGGGT TGATCCTGCG CCGCGAGGAC GAGCTGCACG CGTCCATCGG CCGCAACATT
CGCGAGCTGC GCAAGACCCG CGGGCTCACG CTCAAGCAGC TCTCGCGGCG CACCAATCTG
TCGGTGTCGC TGCTCTCGCA GATCGAGCGC GCCGAGTCCT CGGCCTCGGT GTCGTCGCTG
TTCAAAGTGG CGACGGCCTT GGATGTGCCG ATTACCGAAC TCTTCGGCAG CTTTTAG
 
Protein sequence
MQQLSILVVD DDKDVCEYLQ DFLSSEGYRV SIVNDPTNAL EALRQSEYHV VVLDIMMPKL 
NGIDLLEQIR QSDDDIAVII LTGYPSLETA TSSIEHDVSA YIRKPFTIAE FREAIQRIAK
KKGLILRRED ELHASIGRNI RELRKTRGLT LKQLSRRTNL SVSLLSQIER AESSASVSSL
FKVATALDVP ITELFGSF