Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hoch_5158 |
Symbol | |
ID | 8547569 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haliangium ochraceum DSM 14365 |
Kingdom | Bacteria |
Replicon accession | NC_013440 |
Strand | - |
Start bp | 7105583 |
End bp | 7106179 |
Gene Length | 597 bp |
Protein Length | 198 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 646389834 |
Product | transcriptional regulator, XRE family |
Protein accession | YP_003269539 |
Protein GI | 262198330 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.503819 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.690311 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCAGCAGC TCAGTATCCT TGTCGTCGAT GACGACAAGG ACGTCTGCGA GTACTTGCAG GACTTCCTCT CTTCCGAGGG GTATCGCGTC AGCATCGTCA ACGATCCGAC CAACGCCCTC GAGGCGCTGA GGCAGTCGGA GTACCACGTC GTGGTGCTCG ACATCATGAT GCCGAAGCTC AACGGCATCG ACCTGCTCGA GCAGATTCGC CAGTCGGACG ACGACATCGC CGTCATCATC TTGACCGGGT ATCCGAGCCT GGAGACCGCG ACCTCGTCGA TCGAGCACGA CGTCTCGGCC TACATTCGCA AGCCCTTCAC GATCGCCGAA TTCCGCGAGG CGATTCAGCG CATCGCCAAG AAGAAGGGGT TGATCCTGCG CCGCGAGGAC GAGCTGCACG CGTCCATCGG CCGCAACATT CGCGAGCTGC GCAAGACCCG CGGGCTCACG CTCAAGCAGC TCTCGCGGCG CACCAATCTG TCGGTGTCGC TGCTCTCGCA GATCGAGCGC GCCGAGTCCT CGGCCTCGGT GTCGTCGCTG TTCAAAGTGG CGACGGCCTT GGATGTGCCG ATTACCGAAC TCTTCGGCAG CTTTTAG
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Protein sequence | MQQLSILVVD DDKDVCEYLQ DFLSSEGYRV SIVNDPTNAL EALRQSEYHV VVLDIMMPKL NGIDLLEQIR QSDDDIAVII LTGYPSLETA TSSIEHDVSA YIRKPFTIAE FREAIQRIAK KKGLILRRED ELHASIGRNI RELRKTRGLT LKQLSRRTNL SVSLLSQIER AESSASVSSL FKVATALDVP ITELFGSF
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