| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_5110 |
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| Symbol | |
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| ID | 8547521 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | - |
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| Start bp | 7043156 |
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| End bp | 7044022 |
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| Gene Length | 867 bp |
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| Protein Length | 288 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 646389786 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_003269491 |
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| Protein GI | 262198282 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.163263 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAGCC GCCCTGCCAC CGCGTCCGCC CCCCGCCTCC TCCTGGCCCT GCTCATCGCC
GTGAGCGCGG TTCTGTTTGC GGCCGCGGCG CACGCGGACG ACGCCAGCGC GGCCTACCGC
AAGGGCCTGG CGCTCAAGCA GCAGGGCAAG AGCGACGCAG CCATCTCGGC CTTTCAGCAG
GCCGTGGCCG CCAACCCCAA ACACGCGATG GCGTGGGCGT CGCTGGGCCA TCTTTATAAG
GACAAGCGCG ACTACAAGAA GGCGGTGGAC GCCTACGAGC GCGCCACCGC GATCAGCGAT
GACAACGCGC TGCTGTGGTC GAATCTGGGC ATGGCCTACT ACCGGGCCAA GCGTGTCGAC
GATGCTCAGC GCGCGCTCGA GCGCTCGTTT CAGCTCGACA GCAAGAGCGC CGATGTCAAC
GCCAACCTCG GCACCCTGTA CCGCCAGCGC GGCGACATCG AGAAGGCGCT GCGCCACCTG
CGCTTCGCGG TCAAGCTCGA CCCCAAGAGC GCCGTGTACC ACAGCAACCT GGCCATCGCG
TACCGCAGCA ACAAGCAGTA CGACGAGGCC GAGCAAGAGC TGCGGCAGGC CATCCGCCTC
GACGCCAAAG AGCCCTCGTA TCAGTTCAAT CTGGGTGTGG TGTACCGCTA CCAGGAGAAG
GTCGACGAGG CCATCGCCGC CTACACCCGC GCGGTGCGCC TCGATCCCGG CTACCACAAG
GCCTGGTACG ATCTCGGCCA CATGCACCGC CTCAATCACG ACAACGACAA AGCCATCGAG
GCGTTCAGCA GGTACCTGGA GCTGATCGAG GGCAAAGACG CCGCCGCCGC GCAGCGCGCG
CGCGACGAGA TCGACGCGCT CAAGTAA
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| Protein sequence | MTSRPATASA PRLLLALLIA VSAVLFAAAA HADDASAAYR KGLALKQQGK SDAAISAFQQ
AVAANPKHAM AWASLGHLYK DKRDYKKAVD AYERATAISD DNALLWSNLG MAYYRAKRVD
DAQRALERSF QLDSKSADVN ANLGTLYRQR GDIEKALRHL RFAVKLDPKS AVYHSNLAIA
YRSNKQYDEA EQELRQAIRL DAKEPSYQFN LGVVYRYQEK VDEAIAAYTR AVRLDPGYHK
AWYDLGHMHR LNHDNDKAIE AFSRYLELIE GKDAAAAQRA RDEIDALK
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