Gene Hoch_5012 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_5012 
Symbol 
ID8547422 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp6914654 
End bp6915925 
Gene Length1272 bp 
Protein Length423 aa 
Translation table11 
GC content69% 
IMG OID646389688 
Producthistidyl-tRNA synthetase 
Protein accessionYP_003269394 
Protein GI262198185 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0124] Histidyl-tRNA synthetase 
TIGRFAM ID[TIGR00442] histidyl-tRNA synthetase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0324448 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCGCA GCATCAAATC ACCCCGAGGG ATGAACGATC TCCTGCCCTC CGAGTCGGCC 
AAGTGGCTGT ACTTCGAGGG CGCTTGCCGC TCGCTCTTCG AGCGCTTTGG CTACCACGAG
GTGCGCACGC CCGTGGTCGA ATCCACCGAG CTGTTCGCGC GCGGCATCGG CGAGGCCACC
GACATCGTCG AGAAGGAGAT GTACACCTTC CGCGATCGCA AAGACCGCTC GCTCACCATG
CGCCCCGAGA TGACAGCCGG CTGCGCGCGC GCCTATATCG AGCACGCGGT GCACAAGCGC
GAACCCGTGA CCCGCTGGTT CTACACCGGG CCGATGTTTC GCTACGAGCG CATGCAGACC
GGGCGCTATC GCCAGTTTTA TCAGGTCGGC GTCGAGGCCT TTGGCAGCGA CGCGCCGTCG
ATCGACGCCG AGCAGATCGC CATGTGCTAC GCGCTCTATC AGCAGCTCGG CGTCACCTCG
CTCGAGGTCG TGGTCAACTC GGTCGGCGGC GGCGACGACC GCCAGCGCTA CCGCGACGCC
CTGCTCGCCT TCCTCACCCC GCAGCGCGAG GCCCTGTGCG GCGACTGCCA GCGCCGGCTG
GACGTCAACC CGCTGCGCAT CCTCGACTGC AAGGTCGAAT CCTGTCGCGC CATCGTCGCC
GACGCGCCCA ACATCCTCGA ATCGCTGGGT GCCGACAGCC GCGCGCACTT CGACGCGGTG
TGTGCCCAGC TCACGGCCTT TGGCGTCGAG TTCCGCGTCG ATCCCAAGAT CGTCCGCGGC
CTCGACTACT ACACCGGCAC GGTGTTCGAG ATCCTCGGCC ACAGCGCCGG TCTGGGCACG
CAGAGCACGC TGGTCGGCGG CGGCCGCTAC GACACCTTGC TCGAGCGTCT GGGCGGTCCG
GCGACGCCGG CCGTGGGCTT TGCCCTGGGT GTCGAGCGCG CGGTGCTCAG CCTCGAGGGC
GAGGCCGACG ACTACCAGGG CAAGCCCCTC GCCTACCTGG CCAGCCGCGG CGACGAGGCC
CGCGCGCGCG CCCTGGCCCT GGCCTATCGC CTGCGTCTGG CCGGCCTGCG CATCGAGGTC
GAACACCGCG CGGTCGGGCT CAAGGCGCAG TTCAAGCGCG CCGACAAGCT CGGCGCCCGC
TACGTGATCA CCATCGGCGA GGACGAGCTG GCCTCGGGCG AGGTCAAGAT CCGCGACATG
AAGCGCGGCC AAGAGTCCCC GGCCGCCCTC GATGAACTCG AGGCCGCGCT CAAGCAGCGC
GCGTACGGCT GA
 
Protein sequence
MSRSIKSPRG MNDLLPSESA KWLYFEGACR SLFERFGYHE VRTPVVESTE LFARGIGEAT 
DIVEKEMYTF RDRKDRSLTM RPEMTAGCAR AYIEHAVHKR EPVTRWFYTG PMFRYERMQT
GRYRQFYQVG VEAFGSDAPS IDAEQIAMCY ALYQQLGVTS LEVVVNSVGG GDDRQRYRDA
LLAFLTPQRE ALCGDCQRRL DVNPLRILDC KVESCRAIVA DAPNILESLG ADSRAHFDAV
CAQLTAFGVE FRVDPKIVRG LDYYTGTVFE ILGHSAGLGT QSTLVGGGRY DTLLERLGGP
ATPAVGFALG VERAVLSLEG EADDYQGKPL AYLASRGDEA RARALALAYR LRLAGLRIEV
EHRAVGLKAQ FKRADKLGAR YVITIGEDEL ASGEVKIRDM KRGQESPAAL DELEAALKQR
AYG