| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_5004 |
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| Symbol | |
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| ID | 8547414 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | + |
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| Start bp | 6900912 |
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| End bp | 6902747 |
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| Gene Length | 1836 bp |
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| Protein Length | 611 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 646389680 |
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| Product | oligopeptide transporter, OPT superfamily |
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| Protein accession | YP_003269386 |
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| Protein GI | 262198177 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1297] Predicted membrane protein |
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| TIGRFAM ID | [TIGR00728] oligopeptide transporters, OPT superfamily
[TIGR00733] putative oligopeptide transporter, OPT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.432343 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGTCTC CGCCCCCGAG CGAACCCGCG CCCCACCCCG GCGCCGAGGA GCGCATCTAC
ACCCCCGCCG CCGATGAGGC TCAGCTCACA CTGCGGGCGC TCGTGGTCGG CTGTCTGGTG
GGCGCGCTGT CCGGCCTGGT CAATCTCTAC CTGGGCCTCA AGACCAGCCT CACGGTGGGC
ACCTCGCTGC TCACGGCCAT CCTCAGCATG GCGCTGCTGC CGCTGCTGGG CCGGCGCAAG
CCCTCGACCC TCGAGGTCAA CATCGGCCAG ACCGCGGGCT CGGCCGGCGG CGCCTCGGCC
TCGGCCGCCG GCCTGCTGGC GCCGATCCCG GCCCTGCTGC TGCTCGGCTA CGATCTCTCG
CTGTCGGCCG CGCTGCTGTG GGCGCTGGCC ATCTCGGTGC TCGGCGTGGC CTTCGCCGTG
CCGCTGCGCA ACCAGTACCT GGTGGTCGAG CGCCTGGCCT TCCCCTCGGG CACAGCCACG
GCGCACACCA TCCGCTCGCT GTTCGCCGAC ACCAAGACCT CGCGCCACGC CCGCGTGCTC
ACCATCGCGG CCGCGGCCGC GGGCACCTTC GGCCTGCTGA GCTACTTCGT GCCCGCGCTC
GAGGCGCCCC CGTACTACGC GCTGTGGGCC GGGCCGGCGA TCGACATCGA GATCGGCGCC
CTGGTGCTCC AGGGCGGGCT GTTCCTGGTG CTGGCGTCGT GGACTTTCGG CGTCGCGCTG
GTGCCGGCCC TGGTCGGCGT CGGCATGCTG ATCCCGACGC ACATCTCGCT CTCGCTGCTG
GGCGGCTCGC TGCTCGCCTG GGGGCTGCTG GGCCCGCTGG CCACGGCCGC AGGCTGGGTC
GATGGCGCGC CCTCGGACAT GCTCACGGGA GTGGTGAGCT TCACCATGTG GCCGGGCACC
GCGGTGATGA TCGGCGACGC CCTGGTGAGC CTGCTCTTGT CGTACAAGCT CATCTGGCGC
TCGCTGCGTA TCTCGCGCTC CGGGCGCGAC GCAGACGACG CCGACGCGGT GCCGCGCGCG
TGGTGGCTGG CCGCCCTGGG CGCCGGCACG GTGGGCGCGT GCGTGCTCGC GCAAGCGCTG
TTCGGCATCC CGGTGTGGAT GACCGTGCTG GCGGTGGCGC TGTCGGCCGT ACTGGCCGCG
GTGTCCACGC GCTCGGCCGG CGAGACCGAC ATCAACCCGG TCGGCATCAT CGGCCAGGTC
ACCCAGGTGA GCGTCGGCAG CATGGCGCCG GGCGCGGCCG CCACCAACCT CATGACCGGT
GCGATCACGG TCGCGGGCGC CGACGCGGCC GCCGACCTGA TGCAGGATCT CAAGACCGGC
CAGATGCTCG GCGCGTCGCC GCGCAAGCAG TTCGCGGCCC AGATCTGCGG CATCATCGCC
GGCGTGCTTG TGGTCGTGCC CGCCTTCTTC CTGTTCCGCG AGAACTACGA CATCGGCGCC
AGCACCGCCA TGCCGGCTCC GGTGGCCCAG CTCTGGACCG CGGTCTCCAA GGTCATCACC
AGCGGCGCCG ACAGCCTGCC GCAGCCGGCC TTCGTCGCCG CCGTGATCGG CGGCCTGCTC
GGCGCCGCGT TGGCCGTGGG GCGCGCGCTG TGGCCGCATC GCAAACACTG GTTTCCCAGC
GGCCTGGCCG TGGGCATCAG CTTCCTCTTG CCCGCGCTCT TCGCCGTCGG CATCTGCCTG
GGCGCCGCGG TCGTGGCGCT GTGGCGGCGC TGGCGGCCGG CGCAGGCCGA GGCCCTGTTC
ATGATCGTCT CCTGCGGCCT GCTGGCCGGC GACGGCATCA TGGGCGTCAT CAAAGCGCTC
ATGCAGGTGC TCGGCGTGCC CCCGCTCGTC GGCTGA
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| Protein sequence | MTSPPPSEPA PHPGAEERIY TPAADEAQLT LRALVVGCLV GALSGLVNLY LGLKTSLTVG
TSLLTAILSM ALLPLLGRRK PSTLEVNIGQ TAGSAGGASA SAAGLLAPIP ALLLLGYDLS
LSAALLWALA ISVLGVAFAV PLRNQYLVVE RLAFPSGTAT AHTIRSLFAD TKTSRHARVL
TIAAAAAGTF GLLSYFVPAL EAPPYYALWA GPAIDIEIGA LVLQGGLFLV LASWTFGVAL
VPALVGVGML IPTHISLSLL GGSLLAWGLL GPLATAAGWV DGAPSDMLTG VVSFTMWPGT
AVMIGDALVS LLLSYKLIWR SLRISRSGRD ADDADAVPRA WWLAALGAGT VGACVLAQAL
FGIPVWMTVL AVALSAVLAA VSTRSAGETD INPVGIIGQV TQVSVGSMAP GAAATNLMTG
AITVAGADAA ADLMQDLKTG QMLGASPRKQ FAAQICGIIA GVLVVVPAFF LFRENYDIGA
STAMPAPVAQ LWTAVSKVIT SGADSLPQPA FVAAVIGGLL GAALAVGRAL WPHRKHWFPS
GLAVGISFLL PALFAVGICL GAAVVALWRR WRPAQAEALF MIVSCGLLAG DGIMGVIKAL
MQVLGVPPLV G
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