| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_4960 |
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| Symbol | |
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| ID | 8547368 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | - |
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| Start bp | 6838572 |
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| End bp | 6841586 |
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| Gene Length | 3015 bp |
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| Protein Length | 1004 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 646389634 |
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| Product | ribonuclease R |
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| Protein accession | YP_003269342 |
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| Protein GI | 262198133 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.51612 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAATA CCGATTTGTT TGATACTGGC AGTGTGCTCG CCGCCCTGGA AGATGCCGGG
GCCGCGGGCC TGAAAATCGC TGCCCTGGAA GACGCGCTCG GACTGAGTGA CGACCAGGAC
GGCGAGGCGC AGCGCGCGCG CTTGCGGCGC TTGCTCACCA AGATGGCCAA GGATGGCGCG
CTCACGCGCC CGGCGCGCGG TGTCTACGCC GCGCCCGCCA AGGCCGCTAC CCAAGGCGCC
AAGAAGGCGA CGAAGAAAGC CGCGGCGAAG AAAGCCGCGG CGAAGAAAGC CGCGACGAAG
AAGGCCGCGA CGAAGAAAGC CGCGACGAAG AAAGCCGCGA CGAAGAAAGC CGCGACGAAG
AAAGCCGCGA CGAAGAAAGC CGCGACGAAG AAGGCCGCGA CGAAGAAAGC CGCGACGAAG
AAAGCCGCGA CGAAGAAGGC CGCGACGAAG AAAGCCGCGA CGAAGAAAGC CGCGACGAAG
AAAGCCGCGA CGAAGAAAGC GGCGACGAAG AAGGCGGCGA CGAAGAAAGC GGCGACGAAG
AAAGCGGCGA CGAAGAAAAA GGATGCTGCC GCGAAGCAGT CGGCGACGAA AACGGCTGCA
TCGGACGAGC CGTCGACGAA AAAAGCAGCG GCCAAAAAGG CACCCAAGAA GAAAGCGCCG
GCGAAGTCGC CCAAAAGCAA GCGCGGCGCG GCCAAGGCGG CGGCGCCCGC ACATGAGGAA
CCCGCGAGCG AGGCCCCGGA GGCTGTCGAG GACGCGGCGT CCGGCGAGGG CACGGACGAG
TTTTACGAGC CGCCCGAGCG CGAGCGCCTG CATCCCTCGC AGATTCCCGG CGCCGAGATC
ACGCGCACGC GCCGCGGCGA GACGCGCCCC GAGGAGGACC TTTCGCGCAC CGGACGCATT
ACCGTCCACC CGGCCGGTTA TGGCTTCGTC GAGCTTGAGG ACGGCACCGG GACCGTGTTC
GTGCCCGCCC GTCATCGCGG CGCGGCGCTC GACGGCGACC GCGTGGTGCT CAACACCTGG
TCGGGCTACA AGGGCACCGA GGGCCGCGTG ATCGAGGTGC TCAGCCGCGG TCGCGCCAAG
CTCACGGGCA CCTTGCAGCG CACCGGACGC GCGGTCTATC TCGAGCCCGA CGACCCGCGC
ATCGCCACCG ACTACGGCCA CGTGCCGCTC ATCGACGGCC CGCCGCAGAG CAAGGTCGGC
CAGGCCGCCG TGGTCGAGAT CTGCCGCTAT CCCACGCACG AGCGCCCCGA GCTGGTCGGC
CGGCTGGTGC GCGTGCTCGG CAAGCCCGAC GACCCGCGCA CCGAGATCGA GAAGATCTTG
GCCTTTGCCG ACCTGCCGAC CGAATTCCCG CGCGACGTCG CCCGCCGCGG CGACGAGACC
TCGACCACGG TGCGCACGCG CGACCAGGTC GATCGCGTGG ATCTGCGCGA CCGTCCCTTC
GTGACCATCG ACCCCGTGAC CGCGCGCGAC TTCGACGACG CCGTGTGCAT CGAGGATGGC
CCCCACGGTG GCCCGCGGGT CTGGGTGGCG GTCGCCGACG TCTCGCACTA CGTCGAGATC
GACGATCCCA TCGATCGCGA GGCCGCGGTG CGCGGCGTCT CGGTGTATCT GCCCGACCGC
GTGGTGCCGA TGTTGCCGCT GCCGCTATCG GCCGGCATCT GCTCGCTCAA TCCCGAGGTC
GATCGCTGCG CCATGGTCGT CCGGCTCGAT CTCACCGACG ACGGCCGGGT GCTCGAGCGC
GACTTTGCCG CGGCCGTCAT CCGCTCGCAC GCGCGCCTCG ACTATCCCGG CGTGGCCGCG
GCCCTGAGCG GCGACTTCCG CGGCCGCCGC GACCACTACC GGCCGTGGGC GCCGGCCCTG
AGTCGGCTGG CGGCGCTGGC CCAGCGCATG CGCACGCGGC GCCGGGCCCG GGGCGCGCTC
GAGCTGACCC TGGCCGAGCC CTACGTCATC CTCGACGCCG ACGAGGCCGA GCTGGTGCGC
GACATCGTGC GCTCCAAGGG CGCTGAGGAT GTGCGCCAGG CCTACGAACT GGTCGAGGAG
TTCATGATCG CGGCCAACGA GGCCGTGGGT AAGTACTTCG CCGAGCGCAA CCTGCCCACG
GTGTGGCGCA TCCACGCGCC GCCCGAGCCC GATCGTCTGC ACGAGCTGTT GCCGGTGCTG
GCCAATTTCG GCATCAAGCT CACGGTCGAG GATATCGAGG CCGCGACCAA GCCCACCGGC
ATGCGCCGCA TCATCGAGGC CATCGAGGGC CAGCCGGCCG CGGCCTCGCT GTCGTTTCAG
GTGCTGCGCT CGCTCAAGCA GGCGCAGTAC AGCACCGACC CCATCGGCCA CTTCGGGCTG
GCCTCGCCCT TCTACCTGCA CTTCACCTCG CCGATCCGGC GCTACGCCGA TCTGCTGGTG
CACCGCCAGC TCAAGCACTA CCTGCACGCC GACGGCAAGC CCTCGGGCGG CGGTGCGCGC
ATTCCCGCGG CCGACATCGA CACCCTGGCC GAGCGCTGCG CCCAGATCTC GACCCACGAG
CGGCGCGCGG TCGAGGTCGA GCGCGAGGCC GTGTCCATGT ATCGCGCCTA CTTCATGCGC
GGTCAGGTCG GCGAGCAGTT CACCGGTCGG GTCTCGGCGG TGACCAACTT CGGCGCCTTC
GTCGAGCTCG ACGCGCCCTT TGTCGAGGGC CTGATCAAGC TCGACGACCT CGGCGCCGAC
GCCTTTGGCT TCGACGCCTC GAGCATGCGC CTGCGCGGCC GGCGTTCGGG CTTGCGGCTG
GGCCTCGGTG ACCCGGTGAC CATCGAGGTC ACCAACGTGT CGGTGGCGCG GCGGCGCATC
GACTTCAAGC TGATCAGCGT GGCCGGGCGG AGCAGCCCCA GCGGCGGTGA AAGCAGCGGC
GAGGACGAGG GCACGCCCTA CTGGAAAAGC CGGCGCTCGC GCAACAAGCG CCCGGGCGGC
CGCGACAAGG ACAGAGGCAA GGGCAAGAAC AAGGGCAAGA GCCGCAGCGG CAAGCGGCGT
TCGCGTCGCC AGTGA
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| Protein sequence | MTNTDLFDTG SVLAALEDAG AAGLKIAALE DALGLSDDQD GEAQRARLRR LLTKMAKDGA
LTRPARGVYA APAKAATQGA KKATKKAAAK KAAAKKAATK KAATKKAATK KAATKKAATK
KAATKKAATK KAATKKAATK KAATKKAATK KAATKKAATK KAATKKAATK KAATKKAATK
KAATKKKDAA AKQSATKTAA SDEPSTKKAA AKKAPKKKAP AKSPKSKRGA AKAAAPAHEE
PASEAPEAVE DAASGEGTDE FYEPPERERL HPSQIPGAEI TRTRRGETRP EEDLSRTGRI
TVHPAGYGFV ELEDGTGTVF VPARHRGAAL DGDRVVLNTW SGYKGTEGRV IEVLSRGRAK
LTGTLQRTGR AVYLEPDDPR IATDYGHVPL IDGPPQSKVG QAAVVEICRY PTHERPELVG
RLVRVLGKPD DPRTEIEKIL AFADLPTEFP RDVARRGDET STTVRTRDQV DRVDLRDRPF
VTIDPVTARD FDDAVCIEDG PHGGPRVWVA VADVSHYVEI DDPIDREAAV RGVSVYLPDR
VVPMLPLPLS AGICSLNPEV DRCAMVVRLD LTDDGRVLER DFAAAVIRSH ARLDYPGVAA
ALSGDFRGRR DHYRPWAPAL SRLAALAQRM RTRRRARGAL ELTLAEPYVI LDADEAELVR
DIVRSKGAED VRQAYELVEE FMIAANEAVG KYFAERNLPT VWRIHAPPEP DRLHELLPVL
ANFGIKLTVE DIEAATKPTG MRRIIEAIEG QPAAASLSFQ VLRSLKQAQY STDPIGHFGL
ASPFYLHFTS PIRRYADLLV HRQLKHYLHA DGKPSGGGAR IPAADIDTLA ERCAQISTHE
RRAVEVEREA VSMYRAYFMR GQVGEQFTGR VSAVTNFGAF VELDAPFVEG LIKLDDLGAD
AFGFDASSMR LRGRRSGLRL GLGDPVTIEV TNVSVARRRI DFKLISVAGR SSPSGGESSG
EDEGTPYWKS RRSRNKRPGG RDKDRGKGKN KGKSRSGKRR SRRQ
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