| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_4876 |
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| Symbol | |
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| ID | 8547283 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | - |
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| Start bp | 6732383 |
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| End bp | 6736156 |
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| Gene Length | 3774 bp |
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| Protein Length | 1257 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 646389549 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_003269258 |
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| Protein GI | 262198049 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.968673 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.26689 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCATGG CTTCGCTCGA CGAGGCGATC CGCGCGGTTC TGTCCGAGAC CGACGCACCC
GTGATCGCGC ATGGTCTCAC GCGGGCCAGC CTGGCGCTGG TGGCCGCGCG TCTGGCCGAG
CGCGCCGACG AGCGCGCGGG TCCGGTGGTG GTGGTCGCGC CCGACGAGAG CAGCGCCCGC
GATCTCGCGC AGGACGTGGC CTTTTTCCTG CCGCACGCGC AGCACGCGGC CGCCGGCACC
GAGCCGCTGG CGCCGCCGCC GGCCCTGCAT CTGCCCGCGC TCGACACCTC GCCCTACGCC
GAGCTGTCGC CCGACCGGCT GGCGCTGGCG CAGCGCATGG CCGGGCTGGT GCGGCTGGCC
CGCGGCGGCG CGCTGCTGGG CCCGGTGGTG GTGCTGTCGG CGCCCGCGCT GCTGCGCCGG
GTGATGCCGC GCGAGGCGCT GCTGGCGCGC ACGGCGGTGC TCGCGCGCGA CGACGAGTTC
GACCGCGACG CCACCGCCGA GCGATTGTTG CGCGCCGGCT ACACCCGGGC GCCCGTGGTC
GAGGACGCGG GCACCTTCGC GGTGCGCGGC GGGGTCATCG ACGTGTTCAC GCCGCTGTAT
CGCTATCCGG CGCGCATCGA GCTGTTCGGC GACATGGTCG AGTCGATCCG GCTCTTCGAT
CCCGAGAGCC AGCGCACGCT GCGCGATCTC GACCAGGTGT ACGTGCACCC GGTGCGCGAG
ACCGTGGTGA GCGAGGGCGC CGAGGTGCGC CGACGCATCC TCGACGCCGC GGACGCAGCG
CATCACCCCT CGGCCGAGAC CCGGCGGGTG CTCGAGCGCA TCGACTCGGG CGAGGAGTTT
GTGGGTATCG AGACGCTCAC GCCGGCGTTC CACACCCACC TGGCGCCGCT GGCCTCGTAT
CTGGTCGCCG GGGACGCGCC GCCCGCGTGC TGGGTGATCG TCGATCCCGA CGCGATCGGA
CAGGCGGCCG AAGATGAGCA CGACGTGGCC GAGGATCGCT ACCGCGAGCG CCTCGACGAC
GGCCGACTGG CGTTTCCGCC CAGCGACCAC TACGTCTCGC CCGACGAGCT GCGCGCGACC
CTGGCCGAGC ACGCCTATCG CCTGGAGGCG CGCGGCCTGG AGATGTATCA GGCCGCGGCC
GATCCGCTGC TCAGCGCGAG CGACGAGATG GCGGCGGCGC CCGAGGCGAA GTCGAAGCCG
AAGGCGAAGT CGAAGCCGAA GCCGAAACCC GAGCAGGACG GCGCGCAGCT CATGCGCTTT
GGCGTCGACG ACAACCGCCT GCTGCGCGCC TCGCTCGAGC GCACCCGCCG CCAGGCCGCC
GATGAGCTGA TGAAGCCGCT GGTCGAGGCC ATCACCGCGT GGCGCGGCGA CGCGTATTGC
ATCGCGGTCG CGGCCGGCAC CATGGCGCGC GCGCGCCAGC TCGCCGGACT GCTGTCCGAC
TACGAGTGCA CGGCGCACGT GATCGAAGAG CGCAGCGTCG ATGTCGACGC GCTGTCGCCG
GGGGCGCCGC CCGTGATCTA CCCGGGCGAG CTGAGCGCCG GCTTCGCGCT GCGCACGGAC
AAGCTGGTGA TGCTCACGGC CGACGAGATC TTCGGCCCGC GGCGGCGCAC CAGCGTGCGC
CAGCGGGCGG CCGCGCGACG CGCGCGCAAG GCCCTGGCCG GCGGTATTTC GGACTTCTCG
CAGCTCGCGC CCGGCGACCA CGTGGTCCAC GCGATGCACG GCATCGGCCT GTATCGCGGT
CTCGCCAAGC TGCCGGTGTC GGCCACCGGA CCGGCGGTCG ATTTCCTGCA CATCGAGTAC
CGCGGCGGCC AGTTCTACCT GCCGGTGTAT CGCCTGGGCG AGGTGTCGCG CTACGTCGGC
GCCGAGGGCC ACGCGCCGCG GCTCGACAAG CTCGGCGGCG TGACCTGGCA GAAGGCGCGC
AAAAAGGCCT CGGCGCAGGT CAAGGCGCTG GCCGAGGAGC TGCTCAAGCT GTACGCGCAG
CGCGCGGCGC AGCCGGGTCA CGCCTACCCG TCCTCGGATC ACATGTTCCG CGAGTTCGAG
GCCACCTTCG CCTTCGAGGA GACGCCCGAT CAGCAGCGCG CCATCGACGA GGTGCTCGCC
GATATGGAGA GCGAGCGGCC GATGGACCGC CTGGTCTGCG GCGACGTCGG CTACGGCAAG
ACCGAGGTGG CGCTGCGCGC GTGCTTCAAG GCGGTGGCCG GGGGCAAGCA GGCGGCGCTG
CTGGCGCCGA CCACGGTGCT GGTCGAGCAG CACTACGCCA CGGTGTGCGA GCGTTTCGCC
GGCTGGCCGG TCAGCGTGGG TCGGCTGTCG CGCTTTCAGT CCCGCGCCGA GCAGCTCGAT
ACCATCAAAG GGCTGGCCGC CGGCACCGTC GATCTGGTGG TCGGCACCCA CCGCGTGCTG
TCCAAGGACG TGCGCTTCAA GGATCTGGGC CTGCTGGTCA TCGACGAGGA GCAGCGCTTT
GGCGTCACGC ACAAGGAGCG GCTCAAGCGC GTGCGCACCC AGCTCGATGT GCTGACGCTG
ACCGCGACGC CGATTCCGCG CACCCTGCAC CTGGCCATGA GCGGCCTGCG CGATCTGTCG
ATCATCGCCA CGCCGCCGGC CGACCGCCGG GCGGTGCGCA CCTTTGTCGC CCAGGTGGAC
GACGGCGTGT TGCGCGAGGG CATCCGGCGC GAGCTGGGGC GCGGCGGCCA GGTGTTCTTC
GTGTGCCCGC GCATCGGCGC CGACCCCGCG CCGAGCAAAG GCAAGGTCAA GGGCAAAGGC
AAGAGCCAGG GCGAGACCGC GCGCCGTGTG CGCCGCGGCG ATATCAGCCT CGATGAGTGG
GCCGAGCATC TGCGCGCGCT GGTGCCAGAG GCGCGCGTGG CCGTGGCCCA CGGCCAGATG
AGCGCGGAGG CGCTCGAGAA GGTCATGATC GACTTCGTGT CCGGGAACCT CGAGATTCTC
GTGAGCACGA CGATTGTCGA GAGCGGCTTG GATATCGCGC GCGCCAACAC GATGTTTGTC
GACCGCGCGG ACAGTTTCGG TCTGGCCCAG CTCTATCAGC TCCGCGGCCG CATCGGCCGG
TCCAAGCAGC GCGCCTTCTG CTACCTGCTG GTGCCGCCGC CCGAGAAGCT GTCGTCCGAT
GCTCGCCGCC GGCTCGAGAC CCTGCAGCGC TTCAGCGAGC TCGGCGCCGG CTTCCAGATC
GCCTCGCACG ACCTCGAGAT CCGCGGCGGC GGCGAGCTGC TCGGCGCCAA GCAGTCGGGC
GCCATCGCCG CGGTCGGCTT CGAGGCCTAC GCGGCCATGC TCGAGGAGGC GGTGGCCGAG
CTGCGCAGCG GCGACGCCGG CCTGGTGCGG CCGCGCGACC CCGAGCTCAA CGTCGATGTG
CCGGGCTACA TCCCCGACGA GTACATCCCC GACACGGGCC AGCGGCTCGA CCTCTACAAG
CGCCTGTCCG ACGCCGAGGA CGAAGACGAA CTCAAGATTC TGGTCGAGGA GATCACCGAC
CGCTACGGCG AGCTGCCGGA CGAGGTCGAG CTGCTCGCGG ACCTGATGGT GCTCAAGATC
CACGCCCGCA CCCTGCGGGC TCAGAGCCTG GAGCTCACGC AGTCGCGGAT GTCGCTGGCG
CTGGCCGAGG ACACGCCGCT GGCGCCGCAG ACCCTGGCGT CTCTGGCGCG GAAAAAGGCG
TTCCGGCTCA CGCCGGACAT GCGTTTGGTG CGCAACTTCA CTGCCGAGGA GGGCGAGCGC
CCTTCGGCGA GCGCACGAGC CTGCTTGCTG GAACTCATCG CCTGTGTTAC CTGA
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| Protein sequence | MSMASLDEAI RAVLSETDAP VIAHGLTRAS LALVAARLAE RADERAGPVV VVAPDESSAR
DLAQDVAFFL PHAQHAAAGT EPLAPPPALH LPALDTSPYA ELSPDRLALA QRMAGLVRLA
RGGALLGPVV VLSAPALLRR VMPREALLAR TAVLARDDEF DRDATAERLL RAGYTRAPVV
EDAGTFAVRG GVIDVFTPLY RYPARIELFG DMVESIRLFD PESQRTLRDL DQVYVHPVRE
TVVSEGAEVR RRILDAADAA HHPSAETRRV LERIDSGEEF VGIETLTPAF HTHLAPLASY
LVAGDAPPAC WVIVDPDAIG QAAEDEHDVA EDRYRERLDD GRLAFPPSDH YVSPDELRAT
LAEHAYRLEA RGLEMYQAAA DPLLSASDEM AAAPEAKSKP KAKSKPKPKP EQDGAQLMRF
GVDDNRLLRA SLERTRRQAA DELMKPLVEA ITAWRGDAYC IAVAAGTMAR ARQLAGLLSD
YECTAHVIEE RSVDVDALSP GAPPVIYPGE LSAGFALRTD KLVMLTADEI FGPRRRTSVR
QRAAARRARK ALAGGISDFS QLAPGDHVVH AMHGIGLYRG LAKLPVSATG PAVDFLHIEY
RGGQFYLPVY RLGEVSRYVG AEGHAPRLDK LGGVTWQKAR KKASAQVKAL AEELLKLYAQ
RAAQPGHAYP SSDHMFREFE ATFAFEETPD QQRAIDEVLA DMESERPMDR LVCGDVGYGK
TEVALRACFK AVAGGKQAAL LAPTTVLVEQ HYATVCERFA GWPVSVGRLS RFQSRAEQLD
TIKGLAAGTV DLVVGTHRVL SKDVRFKDLG LLVIDEEQRF GVTHKERLKR VRTQLDVLTL
TATPIPRTLH LAMSGLRDLS IIATPPADRR AVRTFVAQVD DGVLREGIRR ELGRGGQVFF
VCPRIGADPA PSKGKVKGKG KSQGETARRV RRGDISLDEW AEHLRALVPE ARVAVAHGQM
SAEALEKVMI DFVSGNLEIL VSTTIVESGL DIARANTMFV DRADSFGLAQ LYQLRGRIGR
SKQRAFCYLL VPPPEKLSSD ARRRLETLQR FSELGAGFQI ASHDLEIRGG GELLGAKQSG
AIAAVGFEAY AAMLEEAVAE LRSGDAGLVR PRDPELNVDV PGYIPDEYIP DTGQRLDLYK
RLSDAEDEDE LKILVEEITD RYGELPDEVE LLADLMVLKI HARTLRAQSL ELTQSRMSLA
LAEDTPLAPQ TLASLARKKA FRLTPDMRLV RNFTAEEGER PSASARACLL ELIACVT
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