Gene Hoch_4000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_4000 
Symbol 
ID8546396 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp5494864 
End bp5495208 
Gene Length345 bp 
Protein Length114 aa 
Translation table11 
GC content64% 
IMG OID646388672 
Productribosomal protein L22 
Protein accessionYP_003268392 
Protein GI262197183 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0091] Ribosomal protein L22 
TIGRFAM ID[TIGR01044] ribosomal protein L22, bacterial type 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.248751 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.644151 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGCGA GAGCAGTCGT CAAACATATC TCAATGTCCC CGCGCAAGAT GCGCGTGGTG 
GCGAACATGG TGCGCGGAGA GCGCGTCGAG GAGGCGCTGG CCTCCCTGCG CTTCATGCCG
AAGAAGGCTG CCCGCCTCAT CGCCAAGGCG CTGGAGTCGG CTGCCGCAAA CGCCGAGGAC
AAGTCCGGCG GTGACGTCGA TATCGATTCG CTGGTCATCG AGGGCATCTA CGTGGACGGC
GGACCCATCA TCAAGCGCTG GATGCCGCGG GCCATGGGTC GGGCAAACCG CATCAATCAC
CGCACCAGCC ACCTCACGGT GGTCGTCGGT GATGGCAACG ACTGA
 
Protein sequence
MQARAVVKHI SMSPRKMRVV ANMVRGERVE EALASLRFMP KKAARLIAKA LESAAANAED 
KSGGDVDIDS LVIEGIYVDG GPIIKRWMPR AMGRANRINH RTSHLTVVVG DGND