| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3980 |
|---|
| Symbol | |
|---|
| ID | 8546376 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 5484705 |
|---|
| End bp | 5485334 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 646388652 |
|---|
| Product | ribosomal protein S4 |
|---|
| Protein accession | YP_003268372 |
|---|
| Protein GI | 262197163 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
|---|
| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0454614 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAGGT ACACGGGTCC TGTCTGCCGG CTTTGCCGGC GCGAAGAAAT GAAGCTCTTC
CTCAAGGGCG AGCGTTGCTA TACCGAGAAG TGCGGCTACG ACCGTCGCTC TTATCCGCCC
GGTCAGCATG GGCAGTCGCG GCGCCGCAAG CGCTCCGACT ACGGTGAGCA GCTGCGTGAG
AAGCAGAAGG TCAAGCGCAT CTACGGCATC GCCGAGCGCC AGTTCCGCGG CTACTACCAC
CGTGCCTCGC GCATGAAGGG CGTCACCGGC GAGAACCTGA TCCAGCTTCT CGAGCGCCGC
CTCGACAACG TCGTCTACCG CATGGGCTTC GCCTGCGACC ACGCCGAGGC GCGCCAGCTC
GTGCTCCACG GTCACTTCTT GATCGACGGA CGCCGGGTCA ACATCCCGTC GTACCTGATC
CGCTCGGGTC AGACCGTCCA GGTCAAGGAG AAGTCGCGCA CCGTGACTCG CATCGTCGAG
TCGCTGGGCG CGGTCGAGCG CCGCGGCGTG CCGGTGTGGA TCGACCTCGA GAAGGATGCC
TTCAAGGGTT CGGTCAAGGC GCTGCCCTCG CGTTCGGATG TCTCTCTCGA CATCCGCGAG
CAGCTCATCG TCGAGCTTTA CTCCAAGTAG
|
|---|
| Protein sequence | MARYTGPVCR LCRREEMKLF LKGERCYTEK CGYDRRSYPP GQHGQSRRRK RSDYGEQLRE
KQKVKRIYGI AERQFRGYYH RASRMKGVTG ENLIQLLERR LDNVVYRMGF ACDHAEARQL
VLHGHFLIDG RRVNIPSYLI RSGQTVQVKE KSRTVTRIVE SLGAVERRGV PVWIDLEKDA
FKGSVKALPS RSDVSLDIRE QLIVELYSK
|
|---|
| |