Gene Hoch_3971 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_3971 
Symbol 
ID8546367 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp5471842 
End bp5472357 
Gene Length516 bp 
Protein Length171 aa 
Translation table11 
GC content65% 
IMG OID646388643 
Productouter membrane chaperone Skp (OmpH) 
Protein accessionYP_003268363 
Protein GI262197154 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2825] Outer membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0049551 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.392772 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATCGTT CCCTAGCCAT CGCGATTCTC GGCGCTGCTC TCATCATCGC CGGTATGGTC 
ACCGCCGACG CCCAGCCCCG TGGCAGCGAG AAGATCGCCT ACGTCGACCT GGAGCGCACC
CTGATCGAGA CCCCGGCCGG CAAGCGCGCC AGCGCGCGCT TCGAGAAGAG CCTCAAGGCC
AAGCAGAACG AGCTCGATAA GGAGCGCAAA GCGCTCGAGC AGTTCCAGGC CGAGCTCGAG
AAGCAGGCCG CGATGCTCAA GCCCGAGGTG CGGGCGCAGC GCCAGCGCGA GTTCCAGCAG
CGCGCGGCCA AGCTGCAAGA GTCGTTCATG AAGTTCCAGA GCGAGCTGGC CAACGAGCGC
GCCAAGTTGA TTCAGGAAGT GCTCAAGAAG GCCGGCCCGG TGATCGAGAC GGTGGCCAAA
GAGAAGGGCT ACCAGGTCGT GGTCGACCGC GCCGCCGTCA TCTGGGCCAA CGACGCGCTC
GACATCACCG CCGAGATCAA TCGCCGCATC AAGTAG
 
Protein sequence
MHRSLAIAIL GAALIIAGMV TADAQPRGSE KIAYVDLERT LIETPAGKRA SARFEKSLKA 
KQNELDKERK ALEQFQAELE KQAAMLKPEV RAQRQREFQQ RAAKLQESFM KFQSELANER
AKLIQEVLKK AGPVIETVAK EKGYQVVVDR AAVIWANDAL DITAEINRRI K