Gene Hoch_3917 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_3917 
Symbol 
ID8546313 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp5400600 
End bp5401529 
Gene Length930 bp 
Protein Length309 aa 
Translation table11 
GC content72% 
IMG OID646388589 
Productperiplasmic solute binding protein 
Protein accessionYP_003268309 
Protein GI262197100 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0803] ABC-type metal ion transport system, periplasmic component/surface adhesin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.247464 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.1329 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGCATA GAATCATCCC CCGCGCCCTG CTCCCCCTGC TCCTGGCCGC GGCCGCGCTG 
TGGCCGGCCA GCGCCCGCGC CGACGTCGAC ATCGTCGCCA GCGTCCCCGA CCTCGCCGCC
CTGGCCCACG CGATCGCCGG CTCCCACGGG AAGGTGCAGG CGCTGTCGCT GCCCACCCAG
GATCCCCACT GGGTCGACGC CAAGCCCAGC CTCGCGCTCC AGGTCAACCG CGCCGACCTG
CTCATCGCCG TGGGCATGGA GCTCGAGGTC GGCTGGCTGC CCAAGCTGCA GACCGGCTCC
CGCAACCCCA AGGTCCAGCG CGGCGCCGCC GGCTTCCTCG AGTGCTCGGC CTTCGTCGAC
GCCCTGGAGC GCCCCACCGG CCCGATCGAC CGCAGCATGG GCGACATCCA CCCGGGCGGC
AACCCCCACT ACCTGCTCGA CCCGCGCCGC GCCGTCGACT GCGCGCGCGG CATCGCCGAG
CGTCTGGCCG AGCTCGACCC GGCCAACGCC GGCGCCTACC GCAAGAACCT GGCGACCTTC
ACCGCCGCGC TCGCGGCCAA ACGCACCGAG TGGGAGCGGC GCCTCAGCGC CTACCGCGGC
GCGCCCATCG TCACCTATCA CAAGTCCTGG GTGTATCTGT CCGACTGGCT GGGCTTCGAC
GAGGTCGGCT ACCTCGAGCC CAAACCCGGC ATCGCGCCGA CCCCGACCCA CGTCGCCCAG
CTCATCGCCC GGGCGCGCCT GCGCAAGGTC GGCCTGCTGC TGCAGGAGAG CTACTACCCC
AGCAACACCG GCAAGCTGGT CGCCGGCAAG ATCGGCGCGC GCCTGCTGGT CCTGCCCGCG
GCCACCAACA CCGCGCGCGG ACAGAGCTAC ATCGCCCACA TCGACGAGCT GGTGAGCGCC
ATCGAGCGGG CGCTGGGGAG CAAATCATGA
 
Protein sequence
MMHRIIPRAL LPLLLAAAAL WPASARADVD IVASVPDLAA LAHAIAGSHG KVQALSLPTQ 
DPHWVDAKPS LALQVNRADL LIAVGMELEV GWLPKLQTGS RNPKVQRGAA GFLECSAFVD
ALERPTGPID RSMGDIHPGG NPHYLLDPRR AVDCARGIAE RLAELDPANA GAYRKNLATF
TAALAAKRTE WERRLSAYRG APIVTYHKSW VYLSDWLGFD EVGYLEPKPG IAPTPTHVAQ
LIARARLRKV GLLLQESYYP SNTGKLVAGK IGARLLVLPA ATNTARGQSY IAHIDELVSA
IERALGSKS