Gene Hoch_3905 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_3905 
Symbol 
ID8546301 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp5387902 
End bp5388681 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content79% 
IMG OID646388577 
ProductThrombospondin type 3 repeat protein 
Protein accessionYP_003268297 
Protein GI262197088 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.161209 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGCGGT CGCTCGTGCC CGGCGCGCTG TCGCTGGCGC TGCTGCTGGC GCTCGGCTGG 
CTGCTGCTGC ACCCGCACCC GCGGCTCCCC GAGCGTCCCG CCCCGGACCT CGACGGCGAC
GGCGTGGCCG ACGCGCTCGA CGCGTGCGCG CGCGAGGCCG GCCTCTTGCC CGACGGCTGC
CCGCCGCGCG ACAGCGACGG CGATGGCGCG CTCGACCGCG ATGACGAGTG CCCGGAGCGC
CCCGGACCGC CGGGCAACCG CGGCTGTCCC GACCGCGACG GCGACGGCGA CGGCGTGGTC
GATCGCGGCG ACCGCTGCCC GGCGCAGGCC GGCCATCCCG AGGCCGAGGG CTGCGCGCCC
GCCGACAGCG ATGAGGACGG TTTCTGGGAC GCCGAGGACG CGTGCCCCGA GCAGGCCGAG
GTGTGGAACG GGCGCGACGA TGTCGACGGC TGCCCCGACC CCGGCGCCGC GCGGCTCGAG
GTCGCGGCCG GCCGCATCGC GCCCGCGGGG CCGGCCTGGT TTTCGCGCAG CGGGCGGCTC
ACGCGCGCCG GCCGCGTCGG CTTGCAGCGC GCCGCGGCCG TGCTCCACGC GGCCCGCGCC
CGCCGGGTGC GCGTGCAGGT GGCGATGCCG GGCTCGGGCT CGGGGACCGC GCCGCAGCGC
CGGGCCGAGC GCGAGGCCGC AGCCGCGATC GCGGTGTTGG CGCATGAGCG GCCGGGCCTG
GCCCTCGAGC GCGAAGATCT CAGCGGCGAG GGCGCCGGGT TCGCGCTCGC CTTTGAATGA
 
Protein sequence
MLRSLVPGAL SLALLLALGW LLLHPHPRLP ERPAPDLDGD GVADALDACA REAGLLPDGC 
PPRDSDGDGA LDRDDECPER PGPPGNRGCP DRDGDGDGVV DRGDRCPAQA GHPEAEGCAP
ADSDEDGFWD AEDACPEQAE VWNGRDDVDG CPDPGAARLE VAAGRIAPAG PAWFSRSGRL
TRAGRVGLQR AAAVLHAARA RRVRVQVAMP GSGSGTAPQR RAEREAAAAI AVLAHERPGL
ALEREDLSGE GAGFALAFE