| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3893 |
|---|
| Symbol | |
|---|
| ID | 8546289 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 5364086 |
|---|
| End bp | 5365813 |
|---|
| Gene Length | 1728 bp |
|---|
| Protein Length | 575 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 646388565 |
|---|
| Product | Cytochrome b/b6 domain protein |
|---|
| Protein accession | YP_003268285 |
|---|
| Protein GI | 262197076 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1290] Cytochrome b subunit of the bc complex |
|---|
| TIGRFAM ID | [TIGR00782] cytochrome c oxidase, cbb3-type, subunit III |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.290413 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.541896 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAACGAG TACTCGACTG GCTCGACGAC CGCACCGGCT ACCGCCAGGT CGTCCAACAC
TCTCTCGACG AACCAGTGGC CGGCGGGGCG TCCTTCGCCT ACGTCTTCGG TTCGGTCCTC
ACCTTCATCT TGCTGCTGCA GATGGTCACG GGCGTGTTCC TGGCCATGTA CTACAGCCCC
TCGGCCACGG ACGCCTGGGC TTCGGTCGCG TTCATTCAGG ACAGCGTGAC CATGGGCTGG
TTCATCCGCG GCCTGCACTC CTACGGGGCC TCGGCGATGG TCATCGTGTC GGGCCTGCAC
CTGCTGCAGA CCGGACTCTA TGGCGCCTAC AAGAAGCCGC GCGAGATGAA CTGGATCGTC
GGCGTGCTGA TGCTGGGCCT GATCCTGGCG TTTGCGCTCA CCGGCTACTT GCTGCCCTGG
GATCAGACCG GCTACTGGGC GACCAAGGTG GCCACCGGCA TCGCCGGCAC CAGCCCGCTC
ATCGGCGCCG AGCTGCAGCA GGTGGCTCAA GGCGGAAACG AGTACGGCAA CCTCACGCTC
ACGCGCTTCT TCGCCATCCA CGTGTTCATC CTGCCGGCGG CCCTGATCGG CCTGGTGGTG
GTGCACATCG CGCTGTTCCG CCGCCACGGC GTGACCCCCA AGTGGGGCCG CTCGCCGGCC
GAGCTCGAGC GCGACACCGA GCCCTTCTGG CCCGATCAGA TGTTCAAGGA CATCGTCGCC
ATGGCGGTGG CGTTCTCGGT GCTGGTCGGC GTCAATATCT ATAGTCATGG GGTCAAGCTC
GACGGACCGG CCGACCCGGC CTCGAACTTC GACGCGCGGC CCGAGTGGTA CTTCCGGGCG
CTGTTCCAGC TCCTCAAGTA CTTCGAGGGC ACGCTCGAGC ACATCGTGGC GCTGGGCCTG
CCCGTGGTCG TGGGCGGCGT GCTGCTGGGG CTGCCGTTCG TGGATCGCGG GCCGGATCGC
TCACCCAGGG CGCGCATTCC GTATCTCACG GTATTGCTCA TCGGCGCGCT GGCGGCGGGG
GCGTTGACGT ATATCTCGTT CAGCGAGGAC GCGGCCGACG AGAAGCTGCA AGAGCGCATG
CTCGCGGCCG AGGAAGACGC CGCGCTGGCC CGCCGCCTGG CGCGCGAGAA CGGCGTGCCC
GCGGCCGGCG GAACCGCCGT GTACACCACC GCGCCGCACT ATCGCGCGCG GACGCTGTGG
GACGAGCACT GCGGCCCCTG TCACGAGGGC ACCGAACTCG ACGGACCGCG CATCGCCGCG
GGCTACAACT CGCGCGAATG GATCCGTGGG CTGCTGCAGA ACCCCGACGG CGATCACTAC
TTCGGCATGC TCGAGTGGGA TGAGGATCTG CGCATGCCGC CGGTGGAGCT GCCCGCGGCG
GAGATGGACG CGGTGGTCGA ATTCGTCTAC GCCGAGACCG GCGCCACGGA CGCTGACAAG
GCGCTGGCCG AGAAGGGGCA GACGCTGTTC GACGAGGGCG ACTGCAGCGA CTGTCACGAG
CGCGACGGCG TCACCGAGAG CTCGGCGCCC AACCTCGGCG GACGCGGCAC CGTGGACATG
TTGGCCGCGT TCATCGCCAA CGCCGGGCAG CCGCACTTCT TCGGCGAGAT GAACGAGATG
CCGGAGTTTT CGCGGCCCAA GCTGAGCGAG GACGATCGCT ACGCGCTGGC CGAGTATCTG
GTGTGGCTGC AGGCGCAGCC GATGATCGAC GAACACGAAG CGCCCTGA
|
|---|
| Protein sequence | MKRVLDWLDD RTGYRQVVQH SLDEPVAGGA SFAYVFGSVL TFILLLQMVT GVFLAMYYSP
SATDAWASVA FIQDSVTMGW FIRGLHSYGA SAMVIVSGLH LLQTGLYGAY KKPREMNWIV
GVLMLGLILA FALTGYLLPW DQTGYWATKV ATGIAGTSPL IGAELQQVAQ GGNEYGNLTL
TRFFAIHVFI LPAALIGLVV VHIALFRRHG VTPKWGRSPA ELERDTEPFW PDQMFKDIVA
MAVAFSVLVG VNIYSHGVKL DGPADPASNF DARPEWYFRA LFQLLKYFEG TLEHIVALGL
PVVVGGVLLG LPFVDRGPDR SPRARIPYLT VLLIGALAAG ALTYISFSED AADEKLQERM
LAAEEDAALA RRLARENGVP AAGGTAVYTT APHYRARTLW DEHCGPCHEG TELDGPRIAA
GYNSREWIRG LLQNPDGDHY FGMLEWDEDL RMPPVELPAA EMDAVVEFVY AETGATDADK
ALAEKGQTLF DEGDCSDCHE RDGVTESSAP NLGGRGTVDM LAAFIANAGQ PHFFGEMNEM
PEFSRPKLSE DDRYALAEYL VWLQAQPMID EHEAP
|
|---|
| |