Gene Hoch_3893 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_3893 
Symbol 
ID8546289 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp5364086 
End bp5365813 
Gene Length1728 bp 
Protein Length575 aa 
Translation table11 
GC content68% 
IMG OID646388565 
ProductCytochrome b/b6 domain protein 
Protein accessionYP_003268285 
Protein GI262197076 
COG category[C] Energy production and conversion 
COG ID[COG1290] Cytochrome b subunit of the bc complex 
TIGRFAM ID[TIGR00782] cytochrome c oxidase, cbb3-type, subunit III 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.290413 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.541896 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAAACGAG TACTCGACTG GCTCGACGAC CGCACCGGCT ACCGCCAGGT CGTCCAACAC 
TCTCTCGACG AACCAGTGGC CGGCGGGGCG TCCTTCGCCT ACGTCTTCGG TTCGGTCCTC
ACCTTCATCT TGCTGCTGCA GATGGTCACG GGCGTGTTCC TGGCCATGTA CTACAGCCCC
TCGGCCACGG ACGCCTGGGC TTCGGTCGCG TTCATTCAGG ACAGCGTGAC CATGGGCTGG
TTCATCCGCG GCCTGCACTC CTACGGGGCC TCGGCGATGG TCATCGTGTC GGGCCTGCAC
CTGCTGCAGA CCGGACTCTA TGGCGCCTAC AAGAAGCCGC GCGAGATGAA CTGGATCGTC
GGCGTGCTGA TGCTGGGCCT GATCCTGGCG TTTGCGCTCA CCGGCTACTT GCTGCCCTGG
GATCAGACCG GCTACTGGGC GACCAAGGTG GCCACCGGCA TCGCCGGCAC CAGCCCGCTC
ATCGGCGCCG AGCTGCAGCA GGTGGCTCAA GGCGGAAACG AGTACGGCAA CCTCACGCTC
ACGCGCTTCT TCGCCATCCA CGTGTTCATC CTGCCGGCGG CCCTGATCGG CCTGGTGGTG
GTGCACATCG CGCTGTTCCG CCGCCACGGC GTGACCCCCA AGTGGGGCCG CTCGCCGGCC
GAGCTCGAGC GCGACACCGA GCCCTTCTGG CCCGATCAGA TGTTCAAGGA CATCGTCGCC
ATGGCGGTGG CGTTCTCGGT GCTGGTCGGC GTCAATATCT ATAGTCATGG GGTCAAGCTC
GACGGACCGG CCGACCCGGC CTCGAACTTC GACGCGCGGC CCGAGTGGTA CTTCCGGGCG
CTGTTCCAGC TCCTCAAGTA CTTCGAGGGC ACGCTCGAGC ACATCGTGGC GCTGGGCCTG
CCCGTGGTCG TGGGCGGCGT GCTGCTGGGG CTGCCGTTCG TGGATCGCGG GCCGGATCGC
TCACCCAGGG CGCGCATTCC GTATCTCACG GTATTGCTCA TCGGCGCGCT GGCGGCGGGG
GCGTTGACGT ATATCTCGTT CAGCGAGGAC GCGGCCGACG AGAAGCTGCA AGAGCGCATG
CTCGCGGCCG AGGAAGACGC CGCGCTGGCC CGCCGCCTGG CGCGCGAGAA CGGCGTGCCC
GCGGCCGGCG GAACCGCCGT GTACACCACC GCGCCGCACT ATCGCGCGCG GACGCTGTGG
GACGAGCACT GCGGCCCCTG TCACGAGGGC ACCGAACTCG ACGGACCGCG CATCGCCGCG
GGCTACAACT CGCGCGAATG GATCCGTGGG CTGCTGCAGA ACCCCGACGG CGATCACTAC
TTCGGCATGC TCGAGTGGGA TGAGGATCTG CGCATGCCGC CGGTGGAGCT GCCCGCGGCG
GAGATGGACG CGGTGGTCGA ATTCGTCTAC GCCGAGACCG GCGCCACGGA CGCTGACAAG
GCGCTGGCCG AGAAGGGGCA GACGCTGTTC GACGAGGGCG ACTGCAGCGA CTGTCACGAG
CGCGACGGCG TCACCGAGAG CTCGGCGCCC AACCTCGGCG GACGCGGCAC CGTGGACATG
TTGGCCGCGT TCATCGCCAA CGCCGGGCAG CCGCACTTCT TCGGCGAGAT GAACGAGATG
CCGGAGTTTT CGCGGCCCAA GCTGAGCGAG GACGATCGCT ACGCGCTGGC CGAGTATCTG
GTGTGGCTGC AGGCGCAGCC GATGATCGAC GAACACGAAG CGCCCTGA
 
Protein sequence
MKRVLDWLDD RTGYRQVVQH SLDEPVAGGA SFAYVFGSVL TFILLLQMVT GVFLAMYYSP 
SATDAWASVA FIQDSVTMGW FIRGLHSYGA SAMVIVSGLH LLQTGLYGAY KKPREMNWIV
GVLMLGLILA FALTGYLLPW DQTGYWATKV ATGIAGTSPL IGAELQQVAQ GGNEYGNLTL
TRFFAIHVFI LPAALIGLVV VHIALFRRHG VTPKWGRSPA ELERDTEPFW PDQMFKDIVA
MAVAFSVLVG VNIYSHGVKL DGPADPASNF DARPEWYFRA LFQLLKYFEG TLEHIVALGL
PVVVGGVLLG LPFVDRGPDR SPRARIPYLT VLLIGALAAG ALTYISFSED AADEKLQERM
LAAEEDAALA RRLARENGVP AAGGTAVYTT APHYRARTLW DEHCGPCHEG TELDGPRIAA
GYNSREWIRG LLQNPDGDHY FGMLEWDEDL RMPPVELPAA EMDAVVEFVY AETGATDADK
ALAEKGQTLF DEGDCSDCHE RDGVTESSAP NLGGRGTVDM LAAFIANAGQ PHFFGEMNEM
PEFSRPKLSE DDRYALAEYL VWLQAQPMID EHEAP