| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3855 |
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| Symbol | |
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| ID | 8546248 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | - |
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| Start bp | 5306885 |
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| End bp | 5308501 |
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| Gene Length | 1617 bp |
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| Protein Length | 538 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 646388524 |
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| Product | NusA antitermination factor |
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| Protein accession | YP_003268247 |
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| Protein GI | 262197038 |
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| COG category | [K] Transcription |
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| COG ID | [COG0195] Transcription elongation factor |
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| TIGRFAM ID | [TIGR01953] transcription termination factor NusA |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0719337 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0942338 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACCCA ATCTCAACAT GGTCATCGAC CAGGTCGGTC GCGACAAGAA CATCGAGCGC
GATGTCCTGG TTCAGGCGCT CGAGCAGGCG ATCCTCACCG CTGCGAAGAA GACCTTCGGG
GCCAGTCGTG AGCTCGAGGC GCAGTACAAC GAGGATACCG GCGTGGTCGA CCTCTTCCTC
ATCGTCAATG TGGTCGAGGA TGAAGAGGAC GCCATCTACG GTCGCGAGAT CACGGCTCCC
GACGCTGAGA CCCACGGCCT CGAGGCCGAG ATCGGCGACG AGCTGCTGTT CCAGGTCTTC
TACCGCGCCG AGGACAATGA GCGCGCGTCC GAGCAGGACG CCAAGTTCGG CGACCTGATC
GACCTCAAGA ACGCCCACAA GCGCTTCGGC CGCATCGCCG CGCAGACCGC CAAGCAGGTG
ATCTACCAGC GCGTGCGCGA GGCCGAGCGC GACAACGTCT ACAACGAGTA CAAGGACCGC
AAGGGCGAGC TCATCACCGG CATCGTGCGC CGCTTCGAGC GCGGCAGCAT CGTCGTCGAT
CTCGGCCGCG CCGAGGCCAT CTTGCCGACC CGCGATCAGG TGCCGCGCGA GTCGTATCGC
GTGGGCGACA GCATCAAGGC CTACGTGCTC GACATCGACC GCAACGCGCG CGGCCCGCAG
ATCATCCTCT CGCGCACGCA CAAGGGCCTG CTCGAGAAGC TGTTCGAGCA AGAGGTGCCC
GAGATCTACG AGAAGATCGT GCGCATCGAG TCGTCGGCTC GCGAGCCCGG CGCCCGCGCC
AAGATCGCGG TGTCCTCGCG CGACCGCGAC GTCGATCCCG TGGGCGCCTG CGTCGGCATG
AAGGGCTCGC GCGTCCAGGC CGTGGTCCAG GAGCTGCGCG GCGAGAAGAT CGACATCGTG
CCCTACGACG AGGATCCGGC GCGCTTCGTG TGCAACGCGA TCGCGCCCGC CGAGGTCTCG
CGCGTGCTCA TCGACGCCGA CGGCCACCGC ATGGAGCTGG TGGTGCCCGA CGACAAGCTG
TCGCTGGCCA TCGGCAAGAA GGGCCAGAAC GTGCGTCTGG CCTCGCAGCT CACCGGCTGG
CGCATCGATA TCCACTCGGA GTCGAAGATC CAGGATCTCG AGCGCCGCGC CAAGGAGCAG
CTCGCCGCGG TCGAGGGCAT GGACGACGAT CTCGCCGACA CCGTGTTCCG CCTCGGCTGG
CGCTCGGTGG GCGAGCTGTC GCGGGCCGCG CCCGAAGAGC TCGCCGGCGT GCCCGGCATC
GACGGTGTCG AGGTCGGCCG CCAGGTGGTC GCCGGCGCGC GCGCGTTCCT CGAGGAGGAG
AAGCTGCGCC AGGAGCACGC TCGCCGTGAG GCCGATCGCC GCAACAGCCT CAGCGATCGC
GAGCGCCTGC TCGAGGTCCG CGACATGAGC GAGGCGATCG CCGACCAGCT CGCCGAGGAG
GCGCAGGTGA TGCGCGTCGA GGATCTGGCC CGCTGGCCGC TCGACCGCCT GACCATGGCC
GACATCGACG AGGATACTCT GCGCACGCTG CGCCACTGGG CGCGGGTGTG GCTGGGCGAC
ATCTCGGCCG ACGCGCCGCC GCCCAAACCC CGCCGCAGCG AAGAGTCCGA GGCCTAG
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| Protein sequence | MQPNLNMVID QVGRDKNIER DVLVQALEQA ILTAAKKTFG ASRELEAQYN EDTGVVDLFL
IVNVVEDEED AIYGREITAP DAETHGLEAE IGDELLFQVF YRAEDNERAS EQDAKFGDLI
DLKNAHKRFG RIAAQTAKQV IYQRVREAER DNVYNEYKDR KGELITGIVR RFERGSIVVD
LGRAEAILPT RDQVPRESYR VGDSIKAYVL DIDRNARGPQ IILSRTHKGL LEKLFEQEVP
EIYEKIVRIE SSAREPGARA KIAVSSRDRD VDPVGACVGM KGSRVQAVVQ ELRGEKIDIV
PYDEDPARFV CNAIAPAEVS RVLIDADGHR MELVVPDDKL SLAIGKKGQN VRLASQLTGW
RIDIHSESKI QDLERRAKEQ LAAVEGMDDD LADTVFRLGW RSVGELSRAA PEELAGVPGI
DGVEVGRQVV AGARAFLEEE KLRQEHARRE ADRRNSLSDR ERLLEVRDMS EAIADQLAEE
AQVMRVEDLA RWPLDRLTMA DIDEDTLRTL RHWARVWLGD ISADAPPPKP RRSEESEA
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