| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3837 |
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| Symbol | |
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| ID | 8546230 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | + |
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| Start bp | 5285325 |
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| End bp | 5286125 |
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| Gene Length | 801 bp |
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| Protein Length | 266 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 646388506 |
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| Product | Linocin_M18 bacteriocin protein |
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| Protein accession | YP_003268229 |
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| Protein GI | 262197020 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1659] Uncharacterized protein, linocin/CFP29 homolog |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.257523 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.287603 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCTAC TCAAGCGACA TCTCGCCCCC ATCGTTCCCG ACGCCTGGTC CGCCATCGAC
GAAGAGGCCA AGGAGATTTT TCAGGGACAC CTGGCCGGCC GCAAGCTGGT CGATTTCCGC
GGCCCCTTCG GCTGGGAGTA CGCGGCCGTC AACACCGGCG AGCTGCGTCC CATCGACGAC
ACGCCCGAGG ACGTGGACAT GAAGCTGCGC CAGGTGCAGC CGCTCGCCGA GGTGCGGGTG
CCGTTCACGC TCGACGTCAC CGAGCTCGAC TCCGTGGCCC GCGGCGCCAC CAACCCCGAC
CTCGACGATG TCGCCCGCGC CGCCGAGCGC ATGGTCGAGG CCGAGGATTC GGCCATCTTC
CACGGCTGGG CGCAGGCCGG CATCAAGGGC ATCGTCGACT CGACGCCGCA CGAGGCCCTT
GCCGTGGCCA GCGTCAGCGA CTTCCCCCGG GCCGTGCTCT CGGCCGCCGA CACGCTGCGC
AAGGCCGGCG TCACCGGGCC CTACGCTCTG GTCCTCGGCC CCAAGGCCTA CGACGACCTG
TTCGCGGCCA CTCAGGACGG CTACCCCGTG GCCAAGCAGG TGCAGCGCCT GGTGGTCGAC
GGCCCGCTGG TGCGCGCCAA CGCGCTCGCC GGCGCGCTGG TGATGTCGAT GCGCGGCGGC
GACTACGAGC TGACCGTGGG CCAGGATCTG TCCATCGGCT ACGCCTTCCA CGACCGCAGC
AAGGTCGAGC TATTCGTCGC CGAGTCGTTC ACCTTCCGCG TGCTCGAGCC CGGCGCCGCC
GTGCACCTGC GCTACGCCTG A
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| Protein sequence | MDLLKRHLAP IVPDAWSAID EEAKEIFQGH LAGRKLVDFR GPFGWEYAAV NTGELRPIDD
TPEDVDMKLR QVQPLAEVRV PFTLDVTELD SVARGATNPD LDDVARAAER MVEAEDSAIF
HGWAQAGIKG IVDSTPHEAL AVASVSDFPR AVLSAADTLR KAGVTGPYAL VLGPKAYDDL
FAATQDGYPV AKQVQRLVVD GPLVRANALA GALVMSMRGG DYELTVGQDL SIGYAFHDRS
KVELFVAESF TFRVLEPGAA VHLRYA
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