| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3787 |
|---|
| Symbol | |
|---|
| ID | 8546180 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 5204962 |
|---|
| End bp | 5206539 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 646388457 |
|---|
| Product | Radical SAM domain protein |
|---|
| Protein accession | YP_003268180 |
|---|
| Protein GI | 262196971 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1032] Fe-S oxidoreductase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.182556 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.243034 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTCTC GCTCCTGGAA TATCCAGCAA GCCCTGCGCG ATCTCGTCGC TGACGAACAG
GGCACGATCA TCAAAGACGC GCCCCATCGC GTCGCCCTGG TCTACCCCAG CCCGTATCGC
GCGGCCATGT CGTCGCTGGG CTATCAGACC ATCTATCGGC TGCTCAACGA GCTGCCCGAT
GTCGTGGCCG AGCGCGCGGT GCTGCCCGAC GACATCGCCG CCCACGACAA CTCGGGCACG
CCGCTGCTCA CGCTCGAGCA GCAGACGCCG GTGGGCGCGT TCCCGGTGCA GGCCTTCTCG
GTCGCCTACG AGCTCGAGAT CGCCGGCGTG GTCGACTGCC TGCGGCTCTC GGGCGTGCCG
GTGCTGCGCG GCGATCGCGG CCCGCAGCAC CCGCTGATCG TGGCCGGCGG GCCGCTCACC
TTCTCGAACC CCGCGCCGCT GGCGCCGTTC TTCGACATCG TGGTGATGGG CGAGGCCGAG
ACCACGCTGC CCGCGCTGCT GGAGGAGGCC CGCGGCATGA CCCGCGAGCG CGCCATCGAG
GCCTTCGCCG GTCGCCCCGG CTACTACGTG CCCGCGGCCG ACGGCGAGCG CGTCCCGCCC
GTGGCCCGCG CCGACGACGC GCTGCTGCCG GCGCGCTCGC AGATCATCAC GGCCAACACC
GAGCTGCGTT CGATGTTCCT CACCGAGGCG GTGCGCGGCT GCAGCCGCGG CTGCACCTAC
TGCGTGATGC GCCGCTCGAC CAACGGCGGC ATGCGCGCGC TGGCGCCCGA GAAGGTGCTC
GCCGGCATCC CCGAGCACGC GCGCCGCGTC GGCCTGGTCG GCGCCTCGGT CACCGACCAC
CCGCGCATCG TCGATATCGT CCGCGGCGTG GTCGAGGGCG GGCGCGAGGT CGGCATCTCG
TCGCTGCGCG CCGACCGCCT GGGCGACGAG CTGGTGAGCC TGTTGGCCCG CGGCGGCTAT
CGCACCCTGA CCGTGGCCGC CGATGGCGCC AGCGAGGCCA TGCGCCGCCG CGTCGAGCGC
CGCACCAGCG AGAAGCACCT GCTGCGCTGC GCCGAGCTGG CCCGCGACCA CGGCCTGCGC
ACGCTCAAGA TCTATCTGAT GGTGGGCGTG CCCGGCGAGA CCGACGACGA CATCGACGAG
CTCATCCGTT TCACAGCCGA GCTGGTCAAG GTGCACCCGC GCGTGGCCTT TGGCGTGGCG
CCCTTCGTGG CCAAGCGCAA CACCCCGCTC GACGGCAGCC CGTACGCCGG CATCCGCGCG
GTCGAGGCCC GGCTCAGTCG CCTGCGTCGG GGCCTGCGCG GCCGCGCCGA GCTGCGGCCG
ACCTCGGCGC GCTGGGCCTG GGTGGAATAC ATGATCGCCC AGGCCGGCAG CGCCGCCGGG
CTCGCGGTCA TGGACGCGCA CCGCGCCGGC GGTCGCTTTG CAGACTACAA GCGCGCGTTT
CGCGAGCGCG AGGTCACGCC CACCGGACCC GTGGCCCGGG TGCCCAGCAC CAGCGAGCGC
ATCGCGTTGC ACAAGCTCGG CCGGCGCGCG CCCGCGAGCA CGGCGGCGAG CACCGAAGCG
CAGAGCAGCG CGAGCTGA
|
|---|
| Protein sequence | MASRSWNIQQ ALRDLVADEQ GTIIKDAPHR VALVYPSPYR AAMSSLGYQT IYRLLNELPD
VVAERAVLPD DIAAHDNSGT PLLTLEQQTP VGAFPVQAFS VAYELEIAGV VDCLRLSGVP
VLRGDRGPQH PLIVAGGPLT FSNPAPLAPF FDIVVMGEAE TTLPALLEEA RGMTRERAIE
AFAGRPGYYV PAADGERVPP VARADDALLP ARSQIITANT ELRSMFLTEA VRGCSRGCTY
CVMRRSTNGG MRALAPEKVL AGIPEHARRV GLVGASVTDH PRIVDIVRGV VEGGREVGIS
SLRADRLGDE LVSLLARGGY RTLTVAADGA SEAMRRRVER RTSEKHLLRC AELARDHGLR
TLKIYLMVGV PGETDDDIDE LIRFTAELVK VHPRVAFGVA PFVAKRNTPL DGSPYAGIRA
VEARLSRLRR GLRGRAELRP TSARWAWVEY MIAQAGSAAG LAVMDAHRAG GRFADYKRAF
REREVTPTGP VARVPSTSER IALHKLGRRA PASTAASTEA QSSAS
|
|---|
| |