| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3708 |
|---|
| Symbol | |
|---|
| ID | 8546098 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 5105812 |
|---|
| End bp | 5106816 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 646388375 |
|---|
| Product | pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit |
|---|
| Protein accession | YP_003268101 |
|---|
| Protein GI | 262196892 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1071] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit |
|---|
| TIGRFAM ID | [TIGR03182] pyruvate dehydrogenase E1 component, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.184331 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCA AGAACGCGGT ACAGACCGAC AATGCCGAGA GCCAGCGCCC GGCCGCGACC
AAGGAGGAGC TGCTGCCACT CTACCGGCAG ATGCTCGCGA TCCGGCGGTT GGAAGAGGCG
GCGGCCAAGG CTTACTCGCA GGGCAAGATC GGCGGCTTCC TGCACCTCGT CATCGGCCAG
GAGCCGGTGT GCGTGGGCGC GGTCGCCGCC CTCCAGGACG ATGACTACGT GGTCGCGACC
TATCGCGAAC ACGGCCACGC CTACGCCCGG GGCATCTCGG CGCGTGCGAT CATGGCCGAG
CTCTACGGCA AGAAGACCGG CGTCGTGAAG GGCCTCGGCG GCTCGATGCA CTTCTTCGAC
AAGAGCAAGA ACTTCCTCGG CGGCCACGGC ATCGTCGGCG GCCACGTGCC GCTGGCTGCG
GGCGCCGCGT TCAAGAGCCG CTACACCGAG GACGGCCGCG TGACCGTGTG CTTCTTCGGC
GACGGCTCGG CGACCATCGG CGGCTTCGCC GAAGGCGCCG CGCTCGCCGG CCTGTGGCAG
TTGCCGCTGG TGCTCATCTG CGAGAACAAC CAGTACTCCA TGGGCACGCC GCTCAAGCGC
TCCATGGCCA ACACCGACAT CTCGCAGCGC GCCGACGCCT ACAACCTGGC CCGCGACCGC
TTCGAGGGCG ACGACGTGCT CGAGGTCAAG CACCGCGTCG GCCAGGCCAT CAAGCGCGCG
CGCGACGAGG GCAGGCCCAC GCTCATCGAG ATCCTCACCT ACCGCTTCCG CGGCCACTCG
ATGTCGGATC CCGGCCTGTA CCGCACCAAG GAAGAGGTCT CCGAGCGCCG CGAGCGCGAC
CCGATCAAGA CGTCGCGCGC CGTGCTTATC GACGAGTGCG GCGTGGACGA AGACGAAATC
AAGAAGCTCG AGGCCGAGAT CAAGGAAGAG GTCGCCGATG CGGTGCGCTT CGCCGAAGAG
AGCCCCGAGG CCGATTCCTA TCTACCCTAC GTGATCAAGG AGTAA
|
|---|
| Protein sequence | MSTKNAVQTD NAESQRPAAT KEELLPLYRQ MLAIRRLEEA AAKAYSQGKI GGFLHLVIGQ
EPVCVGAVAA LQDDDYVVAT YREHGHAYAR GISARAIMAE LYGKKTGVVK GLGGSMHFFD
KSKNFLGGHG IVGGHVPLAA GAAFKSRYTE DGRVTVCFFG DGSATIGGFA EGAALAGLWQ
LPLVLICENN QYSMGTPLKR SMANTDISQR ADAYNLARDR FEGDDVLEVK HRVGQAIKRA
RDEGRPTLIE ILTYRFRGHS MSDPGLYRTK EEVSERRERD PIKTSRAVLI DECGVDEDEI
KKLEAEIKEE VADAVRFAEE SPEADSYLPY VIKE
|
|---|
| |