| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3615 |
|---|
| Symbol | |
|---|
| ID | 8546005 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 4974919 |
|---|
| End bp | 4976580 |
|---|
| Gene Length | 1662 bp |
|---|
| Protein Length | 553 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 646388284 |
|---|
| Product | AAA ATPase central domain protein |
|---|
| Protein accession | YP_003268010 |
|---|
| Protein GI | 262196801 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0464] ATPases of the AAA+ class |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.109268 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.000690649 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAGACAC CTCAGGAATC CCGGGCTAGT TCCCGTTCCG AAGTCGGAGA CCTCATCCGC
GCGCGCTACC CACTGATTTA CGTGGTCTCG CACGAGGAGG AGCGGGTCGA GAAATCGCTG
CGCGAGCTGT GCATCGAGCG CGAGACGCGG CTCGAGGTGT GGTCGATCAC CGAGGGCTTC
CGCGTGGTCG CCAACGGCAG CGGCAGCCGC GAGATCAAGG ACCCGATGAA GGCCCTCGAC
CACGTCCATC GGGCCGAGGC CGACCAGAAG GCGCTGTTCG TCCTTCGCGA CTTCCACCCC
TTTCTCAAAG AGCCGACGAT TCTGCGCCGC CTGCGCGATC TGGCCGGAGC GCTGCGACGC
ACGCGCAAGA GCCTGATCCT GCTGTCGCCG GTGAAGAAGA TTCCGCCCGA GCTCGAGAAG
TCGATCGCCT CGGTGCTCGA GTGGGAGCTG CCCTCGCGCT CGGAGGTCGA GGCCATCGCC
CGGCGTCTGG TGCCGCAGGC GCCGCCGGCC ACCCAGCAGC AGATCGAGTC CGACCCGACC
TTCATCGAGC ACGTGGTGGA AGCCGCGCTG GGGCTCACCG AGGTCGAGGC CGAGAACGTC
TTCGCCAAGT CGATGGTGCG CACGCACACC TTCGACGTCG AGACTATCCT GGGCGAGAAG
AAGCAGATCA TCGCCAAGAG CGGCATGCTC GAGTACTACG AGCACCGCGA AGAATTCTCC
GACATCGGCG GGCTCGCCAA CCTCAAGGAT TGGCTGGTCA AGCGCCGGCA CGCGTTCTCG
TCGCGGGCAC GCGATTTCGG CCTGCCGCTG CCCAAGGGCA TCCTGATGAT CGGCGTGCCC
GGCACCGGTA AGTCGCTCAC GGCCAAGGCC GCGGGCGCGC TGTGGGAGAT GCCGCTGCTG
CGCCTCGACG TCGGCAAGAT CTTCGCCGGC CTGGTGGGCT CCTCGGAGGA GAACATCCGC
ACCGTCATCC GCACCGCCGA GGCCATCGCG CCGGCGATTC TGTGGATCGA CGAGATCGAG
AAGGGATTTT CGGGGACCAG CTCGTCCGGT CAGTCCGACG GCGGCACCAC CTCGCGCGTG
TTCGGCTCGT TCATCACCTG GCTGCAGGAG AAGGAGAGCT CGGTCTTCGT CATCGCCACG
GCCAACGACG TGAGCGCGCT GCCGCCCGAG CTGCTGCGCA AGGGGCGCTT CGACGAGATC
TTCTTCTGCG ATCTGCCCAC GCGCGACGAG CGCCGCCAGA TCCTCGACAT CCACATCCGC
AAGAAGAAGC GCGACCCCGC GCACTTCGAC CTCGACAAGC TGGCCTCGGC CAGCGTCGAC
TACTCGGGCG CCGAACTCGA GCAGGCCGTG ATCGCGGCGC TCTACGACGC CTTTGACGCC
GGCGAGGATC TCGGCAACGA GGGCCTGATG TCCTCGGTCT CCGAGATCGT CCCGCTGGCC
GTGACCATGC GCGAGCGCAT CGAGGCGATG CGCGACTGGG CGCGCACCCG CGCGCGCTCG
GCATCGCGGC GTCCGGCCGC GCAGTCCGGG AACGCGAACG CGAACGCGAA CGCGAACAAC
AAGAGCTGGC TGGCGCGCCA CGGCGGTGCC GCACCCGAGC AGCCCAGCGC CGACGGCGAC
AAGAACGGCG GCGAATCCCC CGAGCGAAAG CTGGAGCTTT GA
|
|---|
| Protein sequence | MQTPQESRAS SRSEVGDLIR ARYPLIYVVS HEEERVEKSL RELCIERETR LEVWSITEGF
RVVANGSGSR EIKDPMKALD HVHRAEADQK ALFVLRDFHP FLKEPTILRR LRDLAGALRR
TRKSLILLSP VKKIPPELEK SIASVLEWEL PSRSEVEAIA RRLVPQAPPA TQQQIESDPT
FIEHVVEAAL GLTEVEAENV FAKSMVRTHT FDVETILGEK KQIIAKSGML EYYEHREEFS
DIGGLANLKD WLVKRRHAFS SRARDFGLPL PKGILMIGVP GTGKSLTAKA AGALWEMPLL
RLDVGKIFAG LVGSSEENIR TVIRTAEAIA PAILWIDEIE KGFSGTSSSG QSDGGTTSRV
FGSFITWLQE KESSVFVIAT ANDVSALPPE LLRKGRFDEI FFCDLPTRDE RRQILDIHIR
KKKRDPAHFD LDKLASASVD YSGAELEQAV IAALYDAFDA GEDLGNEGLM SSVSEIVPLA
VTMRERIEAM RDWARTRARS ASRRPAAQSG NANANANANN KSWLARHGGA APEQPSADGD
KNGGESPERK LEL
|
|---|
| |