Gene Hoch_3599 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_3599 
Symbol 
ID8545989 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp4954556 
End bp4955515 
Gene Length960 bp 
Protein Length319 aa 
Translation table11 
GC content75% 
IMG OID646388268 
Product5-amino-6-(5- phosphoribosylamino)uracilreductase 
Protein accessionYP_003267994 
Protein GI262196785 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1985] Pyrimidine reductase, riboflavin biosynthesis 
TIGRFAM ID[TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.00922872 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCTGTCCG AATCCCTGGC CTGGCAGGCC GTCCTGAGCT GGGACCGACT GCTCACCCGC 
CGCGACGATG CCGGCCCGGC GGCGCCCGCC TACCTGGTGA CCCCGACGCA CAGCCGCGCG
CTCGCCGCGG GCGACGACGA CGATGCCGCC GAGGCCGCGC TGGCCAGCGC CGGCGCGCAG
GCCCTGCTGG TGCGCCCGCC GCCTCCGCAG AATCCGCCCA AGACCGCGGC GGCGCCCACC
TGGCGCGCCG CCGGCGAGAT CGAGGACGCG GCCGCGCGGC TGCTCGACCT GTACCTGCCC
CTGGTCCTGG CGCGCGCCCC GGCCGGCGGC CGCCCGCGCG TCATCGCCCA CCTGGCGCAG
AGCCTCGATG GCCGCATCGC CACCGCCTGC GGCACCTCGC AGTGGATCAG CGGCAACCAG
GACCTGGTCC ACAACCACCG CATGCGCGCG CTGTGCGACG CCGTGCTGGT CGGCGCCGAG
ACCGTCATCC ACGACGACCC GCAGCTCACC TGCCGCGAGG TCGAGGGCGC GCATCCCACG
CGCGTGGTGC TCGACCCCCG CGGCCGCGTG AGCGCCGAGC GGCGCATCTT CCAGGACCGC
GTGGCGCCGA CCGTGGTCAT CGGCAACCAG GAGGGCGAGC ACGCCCTGCC CGCGCACGTC
ACCCGCCTCC AGGTCGGCAC CCCGGGCGCC CGCATCGCGC CCGGCGACAT CCTCGACGCC
CTCGCTGTCC ACGGTATCCA CCGCCTGTTC GTCGAGGGCG GCGGCCTCAC CGTGTCGGCG
TTCTTGCAGG CCGGCCTGCT CGACCGCCTG CAGATCACGG TGGCCCCGAT GATCATCGGC
TCGGGCCGCG CCAGCATCTC GCTGCCCGAT ATCGACTCCC TCGAGCACGC GCTGCGCCCC
GAGGTGCGGC GCTTCGTGTT CGACACCGAC GTGATGTTCG AGTGCGTGTT CGCGCGCTGA
 
Protein sequence
MLSESLAWQA VLSWDRLLTR RDDAGPAAPA YLVTPTHSRA LAAGDDDDAA EAALASAGAQ 
ALLVRPPPPQ NPPKTAAAPT WRAAGEIEDA AARLLDLYLP LVLARAPAGG RPRVIAHLAQ
SLDGRIATAC GTSQWISGNQ DLVHNHRMRA LCDAVLVGAE TVIHDDPQLT CREVEGAHPT
RVVLDPRGRV SAERRIFQDR VAPTVVIGNQ EGEHALPAHV TRLQVGTPGA RIAPGDILDA
LAVHGIHRLF VEGGGLTVSA FLQAGLLDRL QITVAPMIIG SGRASISLPD IDSLEHALRP
EVRRFVFDTD VMFECVFAR