| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3572 |
|---|
| Symbol | |
|---|
| ID | 8545962 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 4921523 |
|---|
| End bp | 4923337 |
|---|
| Gene Length | 1815 bp |
|---|
| Protein Length | 604 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 646388241 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_003267967 |
|---|
| Protein GI | 262196758 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1022] Long-chain acyl-CoA synthetases (AMP-forming) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0299599 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.131149 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAAGC AATACACGTC GTTGGTCGAA ATGCAGGAAG ACGCATGCGA GCGCTTTGCC
AAGCGCCGCG TGTTCGGGAC CAAGCTCGAA GGCATCTACC GGTGGATCAC CTACGCGGAC
TTCGCGAGCC TGGTGAACCG CTTCCGCGCC GCGTTGGCAC AGCTCGGCGT CGAGGCCGGT
GACCGCGTCG CCGTGGTCTC CAACAACCGC GTGGAATGGG CCGTGGGCGC GTACGCGACC
TACAGCCTCG GCGGCCACTA CGTGCCCATG TACGAGGCGC AGTCGCCGGC CGAGCGGCGC
TACATCATCG AGGACTCGAA CTCCAAGGTG GCGCTGGCGG CGACCGAGGC CATCTACCAG
GAGCTGGCGG GCCTGATCGG CGAGGTCGAT AGCCTCGAGC ACGCGATCTG CTTCGACGCG
TCCGAGTCGG CGCCGCACAG CTATCTGCAT CACCTCGCGG TCGGCGCCGA GAACCCGGTG
TCCTCGGTGC ACCCCTCGCC CGATGACCTC GCCGGCCTGC TGTACACCTC GGGCACGACG
GGCAAGCCCA AGGGCGTGAT GCTCAGCCAC AACAACATCT GCTCGAACCT GCGCGTGATG
CCCGACCTGT TCCCGCTCTC GCACGAGGAC GTGACCTGCA GCTTCCTGCC CTGGGCCCAC
GCCTTCGGCC AGACCGCGGA GCTGCACGGC ATCATCAGCG CGGGCGCCTC GATGGGCCTG
GCCGAGAGCG TGCAGACGCT GATGGAGAAC TTCCTCGAGG TCCGGCCGAC GGTGCTGCTG
GCGGTGCCGC GCATCTTTCA CCGCATCTAC GACGGCGTGA AGAAGCGCAT GGCCGATGAG
CCCAAGCTGC GCCAGAAGCT GTTCGAGCAC GCGCTCTCGG TGTCGCAGAA GCGCACCGAG
ATGCGCGATC ACGGCGGCAG CAGCACCTTG CTCGATATCC AGCACAAGCT CTTCGAGCGG
GTGGTGTTCG CCAAGATCAA GGAGCGCTTC GGCGGGCGCC TGCGCTTCGT GATGTCGGGC
GGCGCCGCGC TGGCGGTCGA GGTCGCCGAG TTCATCGATA ACCTCGGCAT CACGGTGTTC
GAGGGCTACG GGCTCACCGA GACCTCGCCG GTGGCCACGG TCAACCGCCC GGGCGCGCGC
CGCATCGGCA CTGTGGGCCA GGCCATCCCC GACGTGTCTA TCTATATCTG CGATGAGCAG
GGCAAGCTGC TGCCGCCCGA GACCGACGGC GAGGTGCTCA TCAGCGGGCC CAACATCATG
CAGGGCTATC ACGGCCTGCC CGAGGCCACG GCCGAGGTCA TGGTCGAGGT CGACGGCAAG
CAGGCCTTCC GCACCGGCGA CATGGGCCGG CTCTCGCAAG ATGGCTTCCT GTCGATCACG
GGCCGCTTCA AAGAGCAGTA CAAGCTCGAG AACGGCAAGT ACGTGGTGCC GACGCTGCTC
GAGGATCAGC TCAAGCTGTC GGGCTTCATC ACCCAGGCGT TCATCTACGG CGACAACAAG
CCGTTCAACG TGTGCCTGAT CGTGCCCGAC TTCGAGGCGA TTCAGAAGTG GGCCAAGAGC
GACGAGGGCG GCGGCGTGAG CGGCGATCTA TCGCCCGAGG CGCTGTGCGC GGACGCGCGC
GTCCACGCCA AGATCGGCGA GGAGCTGGCC GCGTACGGGG CCGAGTTCAA GCACTTCGAG
CAGCCCAAGC GGTGGAAGCT CCTGGTCGAG GACTTCAGCC CCGAGAACGG CCTGATGACG
CCCAAGATGA GCGTTCGCCG CCGCGCGGTG ACCGCGCGCT ACCAGGACGA GCTCGACAAG
CTGTACATCG ACTGA
|
|---|
| Protein sequence | MSKQYTSLVE MQEDACERFA KRRVFGTKLE GIYRWITYAD FASLVNRFRA ALAQLGVEAG
DRVAVVSNNR VEWAVGAYAT YSLGGHYVPM YEAQSPAERR YIIEDSNSKV ALAATEAIYQ
ELAGLIGEVD SLEHAICFDA SESAPHSYLH HLAVGAENPV SSVHPSPDDL AGLLYTSGTT
GKPKGVMLSH NNICSNLRVM PDLFPLSHED VTCSFLPWAH AFGQTAELHG IISAGASMGL
AESVQTLMEN FLEVRPTVLL AVPRIFHRIY DGVKKRMADE PKLRQKLFEH ALSVSQKRTE
MRDHGGSSTL LDIQHKLFER VVFAKIKERF GGRLRFVMSG GAALAVEVAE FIDNLGITVF
EGYGLTETSP VATVNRPGAR RIGTVGQAIP DVSIYICDEQ GKLLPPETDG EVLISGPNIM
QGYHGLPEAT AEVMVEVDGK QAFRTGDMGR LSQDGFLSIT GRFKEQYKLE NGKYVVPTLL
EDQLKLSGFI TQAFIYGDNK PFNVCLIVPD FEAIQKWAKS DEGGGVSGDL SPEALCADAR
VHAKIGEELA AYGAEFKHFE QPKRWKLLVE DFSPENGLMT PKMSVRRRAV TARYQDELDK
LYID
|
|---|
| |