| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3566 |
|---|
| Symbol | |
|---|
| ID | 8545956 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 4909648 |
|---|
| End bp | 4911663 |
|---|
| Gene Length | 2016 bp |
|---|
| Protein Length | 671 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 646388235 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_003267961 |
|---|
| Protein GI | 262196752 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.707704 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0791052 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGCC CCGAGCCGCC TCCCCAGCAT GCCAACGACG CCGGCGACGC CAACGCCGCC
GAGACCCGCG CACCGGGCCG GAGCCCGGAC CCGACGCCAG ATCATAAGAC AGGCCCGACG
CCAGACCACG CGATAGACCA GACGCCGGCC TCGCTGCCGG ATGCGGCGCC GCCCGCGTCT
GCCGCCGCGC GCGCTGGCAA GCGCAACGCG CTCGTCGCCG TCGTCGCGCT GGTGGCCTTT
GCCCTGGGCC TGTGGCTCGG CGGCGGCAGC GAGCCGGGCG GCCACGAGCA CGCCGGCGCC
GAGGCCGCAG CCGAGGCTCA GGTGTGGACC TGCTCCATGC ACCCGCAAGT CCGCAGCCCC
GAGCCCGGCG CTTGCCCGAT CTGCGGCATG GACCTCATCC CGGTGTCGGA GGCCGGCGGC
GGCGACGACG ACGACACCGC GCCCCGGCGC GTGGCTCTGA GCCCGGCGGC GCGTGAGCTG
GCGCGCATCC GCACGCGCGC GGTGGTCACC GCTGCCGACA GCGCTCGTGC TCTGCATTTG
CTCGGACGCG TGGACTACGA CGAGACGCGT ACGCGCACGA TCACCGCGTG GACGGCCGGG
CGCCTCGAGC GCCTGCGGGT CGCGACCACC GGGCAGCGCA TCCGCGCCGG CCAGCCGGTG
GCCGACATCT ACAGCCCGGA GCTGTACAGC GCCCAGGAGG ACCTGCAGCA GGCCCGGCGC
CAGCTCGGGC GACTGCAGCA CGCCTCGCCG ACCGTGAAAA AGGGCTCGGT GCAGGCGCTC
GAGGCCACCC GCGAGCGGCT TCGCCTGCTC GGCGTCGATG AGGCCACCCT GCGCGCCATG
GAGGCGGCCG AGCACCCGCG TCGCCTGGTC ACCATCCGCG CGCCCATCGG CGGCACGATC
ATCGAGCGCA TGATGAGCGA GGGCAACTAC GTCACCGTGG GCACGCCGCT GTACCGGGTC
GCCGACCTGT CGGTGCTGTG GGTGCAGCTC GACGCCTACG AGGACGATCT GGTGCTGCTG
CGCCCGGGTC AGACGGTGAC CCTCGAGACC TCGGCGGTGC CCGGCGAGAC CTTTACCGGG
AAGGTGGCGT TTATCGACCC GGTGGTCGAC AAACGAACCC GCACGGCGCG CGTGCGTGTG
GTCGTGCCCA ATCGCGAGGG CGCGCTGCGG CCGGGCATGT TCGTCGAGGC CGCGGTGCAG
GCTGAGGCCG ACGGCGACGA GCGGCTGGTC ATACCGGCCA CCGCGCCGCT GTTCACGGGC
CGGCGCTCGC TGGTCTACGT CGAGCTGGCG AACGCGTCGC GGCCGACCTA CGAGGCCCGC
GAGGTGGTGC TCGGTCCCAA AGCCGGAGAC GTGTATCCAG TGCTCGAAGG GCTCGAGGCC
GGCGAGCGGG TGGTGATTCA CGGCGCCTTT GCGCTCGATG CCGACCTGCA GATCCGCGGC
GGTGAGAGCA TGATGATGGA CGAGGGCGCA GGTGGCGCCG AGCTGGCGCT GCCGGCGGCC
GCGCGCGAGC CCTTTGCGGC CGCGATCGGC GCGTATCTGC GCGCGCAGAA AGCGCTGGCC
GCGGACGACC TGGCAGCGGC GCAGGCGGCG GCCGGCGACA CCGGCAGCGC CCTGGACGCG
CTCGCCGAGG CGCTGGCGGC GGCCGCGGAC GACGACGAGC GAGCGTCCGA AGCCCCCCCG
AACGCGGGCC AGAAGGCGGC GCAGCGAGCT GCCGAGGCGG CGCGCGCGCT GGCTGCGAGC
GGCGACATCG AGCAGGCGCG GCGCCATTTC GACCCGCTCA GCCGCGAGGC CATCGCCCTG
GTCGAGCGCT ACGGCAACCC GCTGGCCGAC ACCGTGCGCG TGGCCTACTG CCCCATGGCG
ATCGGCGATC GCGGCGCGCG CTGGCTGCAG CGCGAAGAGC GTGTGCTCAA CAGCTATTTC
GGCGCCTCCA TGCTCCACTG CGGCGAGATC GAGGACAGCC ACGACGCCGA TGCTGCCGGC
GCCGAGACCG GCGCCGAGCC AGAGGGGCAA CCATGA
|
|---|
| Protein sequence | MTRPEPPPQH ANDAGDANAA ETRAPGRSPD PTPDHKTGPT PDHAIDQTPA SLPDAAPPAS
AAARAGKRNA LVAVVALVAF ALGLWLGGGS EPGGHEHAGA EAAAEAQVWT CSMHPQVRSP
EPGACPICGM DLIPVSEAGG GDDDDTAPRR VALSPAAREL ARIRTRAVVT AADSARALHL
LGRVDYDETR TRTITAWTAG RLERLRVATT GQRIRAGQPV ADIYSPELYS AQEDLQQARR
QLGRLQHASP TVKKGSVQAL EATRERLRLL GVDEATLRAM EAAEHPRRLV TIRAPIGGTI
IERMMSEGNY VTVGTPLYRV ADLSVLWVQL DAYEDDLVLL RPGQTVTLET SAVPGETFTG
KVAFIDPVVD KRTRTARVRV VVPNREGALR PGMFVEAAVQ AEADGDERLV IPATAPLFTG
RRSLVYVELA NASRPTYEAR EVVLGPKAGD VYPVLEGLEA GERVVIHGAF ALDADLQIRG
GESMMMDEGA GGAELALPAA AREPFAAAIG AYLRAQKALA ADDLAAAQAA AGDTGSALDA
LAEALAAAAD DDERASEAPP NAGQKAAQRA AEAARALAAS GDIEQARRHF DPLSREAIAL
VERYGNPLAD TVRVAYCPMA IGDRGARWLQ REERVLNSYF GASMLHCGEI EDSHDADAAG
AETGAEPEGQ P
|
|---|
| |