Gene Hoch_3521 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_3521 
Symbol 
ID8545910 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp4855223 
End bp4855987 
Gene Length765 bp 
Protein Length254 aa 
Translation table11 
GC content68% 
IMG OID646388189 
ProductABC transporter related protein 
Protein accessionYP_003267916 
Protein GI262196707 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.329069 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.185776 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATACGGC TGGACCAAAT CAACAAGTCC TATCGCATGG GACACAGCAG CCTGCACGTG 
CTCAAGGACG TCGAGTTCAC CGTCGAGCGC GGTGAGATGG TCTCGATCAT GGGCTCCTCG
GGCTCGGGCA AATCCACCTT GCTCAACATC CTGGGCCTGC TCGACCGCTT CGACAGCGGC
ATCTACGAGC TCGACGGCAC CTCGATGGGC AACCTGTCCG AGAGCAAGGC GGCCATCTAC
CGCAACCGCT TCATCGGCTT CGTGTTTCAG GCCTTCCACC TGCTGCCCTT CAAGAACGCG
GTCGAGAACG TCGCCCTGCC GCTCTACTAT CAAAAGGTGC CGCGGCGCGA TCGCAACCGC
AAAGCCATGG AGTACCTCGA GCGCGTGGGG CTGGCGCAGT GGGCCGAGCA CCTGCCCTCG
GAGCTCTCGG GCGGACAGAA ACAGCGCGTG GCCATCGCCC GGGCGCTGAT CACCGAGCCC
AGCATCATCC TCGCCGACGA GCCCACGGGC GCGCTCGACA GCGCCACCTC CGAGCAGATC
ATGCAGCTCC TCGAGGAGGT CCACCGCGCC GGCATGACCA TCGTCCTGGT GACTCACGAA
CCCGACATCG GCGCGCGCAG CGACCGCATC ATCCGCCTGC GCGACGGCCG CGTGCTCGCC
CACGAGGCCG CCGCTACCGC GCCCGCCGAT GCGCCCGCCG CGGCCCCGTC CGCGGCCCCG
TCTGCGGCCG ATGCGCCCGC CGCCGCGCCG GCCGCGCAGT CCTGA
 
Protein sequence
MIRLDQINKS YRMGHSSLHV LKDVEFTVER GEMVSIMGSS GSGKSTLLNI LGLLDRFDSG 
IYELDGTSMG NLSESKAAIY RNRFIGFVFQ AFHLLPFKNA VENVALPLYY QKVPRRDRNR
KAMEYLERVG LAQWAEHLPS ELSGGQKQRV AIARALITEP SIILADEPTG ALDSATSEQI
MQLLEEVHRA GMTIVLVTHE PDIGARSDRI IRLRDGRVLA HEAAATAPAD APAAAPSAAP
SAADAPAAAP AAQS