Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hoch_3521 |
Symbol | |
ID | 8545910 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haliangium ochraceum DSM 14365 |
Kingdom | Bacteria |
Replicon accession | NC_013440 |
Strand | - |
Start bp | 4855223 |
End bp | 4855987 |
Gene Length | 765 bp |
Protein Length | 254 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 646388189 |
Product | ABC transporter related protein |
Protein accession | YP_003267916 |
Protein GI | 262196707 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.329069 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.185776 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATACGGC TGGACCAAAT CAACAAGTCC TATCGCATGG GACACAGCAG CCTGCACGTG CTCAAGGACG TCGAGTTCAC CGTCGAGCGC GGTGAGATGG TCTCGATCAT GGGCTCCTCG GGCTCGGGCA AATCCACCTT GCTCAACATC CTGGGCCTGC TCGACCGCTT CGACAGCGGC ATCTACGAGC TCGACGGCAC CTCGATGGGC AACCTGTCCG AGAGCAAGGC GGCCATCTAC CGCAACCGCT TCATCGGCTT CGTGTTTCAG GCCTTCCACC TGCTGCCCTT CAAGAACGCG GTCGAGAACG TCGCCCTGCC GCTCTACTAT CAAAAGGTGC CGCGGCGCGA TCGCAACCGC AAAGCCATGG AGTACCTCGA GCGCGTGGGG CTGGCGCAGT GGGCCGAGCA CCTGCCCTCG GAGCTCTCGG GCGGACAGAA ACAGCGCGTG GCCATCGCCC GGGCGCTGAT CACCGAGCCC AGCATCATCC TCGCCGACGA GCCCACGGGC GCGCTCGACA GCGCCACCTC CGAGCAGATC ATGCAGCTCC TCGAGGAGGT CCACCGCGCC GGCATGACCA TCGTCCTGGT GACTCACGAA CCCGACATCG GCGCGCGCAG CGACCGCATC ATCCGCCTGC GCGACGGCCG CGTGCTCGCC CACGAGGCCG CCGCTACCGC GCCCGCCGAT GCGCCCGCCG CGGCCCCGTC CGCGGCCCCG TCTGCGGCCG ATGCGCCCGC CGCCGCGCCG GCCGCGCAGT CCTGA
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Protein sequence | MIRLDQINKS YRMGHSSLHV LKDVEFTVER GEMVSIMGSS GSGKSTLLNI LGLLDRFDSG IYELDGTSMG NLSESKAAIY RNRFIGFVFQ AFHLLPFKNA VENVALPLYY QKVPRRDRNR KAMEYLERVG LAQWAEHLPS ELSGGQKQRV AIARALITEP SIILADEPTG ALDSATSEQI MQLLEEVHRA GMTIVLVTHE PDIGARSDRI IRLRDGRVLA HEAAATAPAD APAAAPSAAP SAADAPAAAP AAQS
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