Gene Hoch_3519 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_3519 
Symbol 
ID8545908 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp4852696 
End bp4853946 
Gene Length1251 bp 
Protein Length416 aa 
Translation table11 
GC content69% 
IMG OID646388187 
Productprotein of unknown function DUF214 
Protein accessionYP_003267914 
Protein GI262196705 
COG category[V] Defense mechanisms 
COG ID[COG0577] ABC-type antimicrobial peptide transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.225235 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.132299 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCGACC TCGACGGCTG GCAGGAGATC CTCAGCACGC TGCGCAGGAA CAAGCTGCGC 
ACCGTGCTCA CGGCCGTCGG CGTGCTGTGG GGCATCTTCA TCCTCATCGT CATGCTGGGC
GCGGGCAACG GCCTGGAGAA CGGCGTGAAC AGCAGCATGA GCGGCTTCGC GCGCAACGCC
GTGTTCGTCT GGGGGCAGCG CACCAGCCTG CCCTACGCCG GGCTCAAGCC GGGCCGCCGG
GTGCGCTTCA ACAACGGCGA TGTCGACGCC CTGCGCGCCG GTGTCCCCGC CATCGCCCAC
CTGGCGCCGC GCAACCAGAT GGGCGGCTTC CGCGCCGGCT CGCTGGTGCG CCGCGGCACC
AAGACCGGCA GCTTCACGGT CAGCGGCGAC TACCCGGCGA TTCAGCACAT CCAGCCCATC
CGCTTGCTCG AGGGCCGCTT CCTCAACCAG CTCGATATCG ACGAGCGCCG CAAGGTGGCC
GTGATCGGAC GACCGGTCAA AGAACAGCTC TTCGCGGCCG AGGAGCCGGC CGTGGGCGAC
GCCATCGCCG CCGGCGGCGT GTACTTTCAG GTCATCGGCG TGTTCGAGTC GCCGCAGGGC
GGCGAGCGCG GCGAGCGCCA GGCGCAGGTG GTGCACGTGC CCTTCACGAC CTTCCAGCAG
GCCTTTCACC AGGGCGATCA GGTCGGCTTC TTCGCCCTCA CCGCCGACCC CAGCGTCGGC
GCCGCCGAGA TCGAGACCCA GATCAAAACC GTGCTGGCCG GCCGCCACCG CATCGCGCCC
GCCGACCTGC AGGCCATCGG CACCTACAAC GCCCAGGAAG ACTTTCAGAA GATGCAGAAC
CTGTTCACCG GCGTGCGCAG CATCATCTGG TTCTCGGGCG TGATGACCCT GCTCGCCGGC
GTCATCGGCG TGGTCAATAT CATGCTCATC TCGGTCAAGG AGCGCACCCG CGAGATCGGC
GTGCGCAAGG CCCTGGGCGC CACCCAGCGC TCGATCGTGG CCATGATCCT GCGCGAGTCG
GTGCTGCTCA CCAGCCTCGC CGGCTGCTTC GGCATCCTCG CCGGCGTGGC CGTGATCGAG
CTGCTCGCCG ACCCGAGCTT TGCCAGCGAC ACCTTCCAGG CGCCGACCGT GAGCTTTCCG
GCCACGGTGG CCGCGACCAT CATCCTCATC ATCGCCGGCG GACTGGCCGG GATTTTACCG
GCGCGCCACG CCGCCAGCAT CGACCCGGTG CGCGCGCTCA GAGCGGAGTA A
 
Protein sequence
MFDLDGWQEI LSTLRRNKLR TVLTAVGVLW GIFILIVMLG AGNGLENGVN SSMSGFARNA 
VFVWGQRTSL PYAGLKPGRR VRFNNGDVDA LRAGVPAIAH LAPRNQMGGF RAGSLVRRGT
KTGSFTVSGD YPAIQHIQPI RLLEGRFLNQ LDIDERRKVA VIGRPVKEQL FAAEEPAVGD
AIAAGGVYFQ VIGVFESPQG GERGERQAQV VHVPFTTFQQ AFHQGDQVGF FALTADPSVG
AAEIETQIKT VLAGRHRIAP ADLQAIGTYN AQEDFQKMQN LFTGVRSIIW FSGVMTLLAG
VIGVVNIMLI SVKERTREIG VRKALGATQR SIVAMILRES VLLTSLAGCF GILAGVAVIE
LLADPSFASD TFQAPTVSFP ATVAATIILI IAGGLAGILP ARHAASIDPV RALRAE