| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3408 |
|---|
| Symbol | |
|---|
| ID | 8545796 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 4706359 |
|---|
| End bp | 4707372 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 646388075 |
|---|
| Product | diphosphomevalonate decarboxylase |
|---|
| Protein accession | YP_003267803 |
|---|
| Protein GI | 262196594 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG3407] Mevalonate pyrophosphate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01240] diphosphomevalonate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0207925 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.138111 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCCC CCCACGGCGC CGCCCGCGCC CGCGCCCACG CCAACATCGC CCTGATCAAG
TACTGGGGCA AGCGCGACCG CGCGCGCAAC CTGCCCGCCG CCGGCAGCTT GTCGCTCACC
CTGGCCGCTC TGACCACGAC CACGAGCGTG CGCTTCGACC CCGCCCTGGC CGGCGACCGC
CTGGTTCTCG ACCACCGGGT CGAAGACGGC AAGGCGCTGG CGCGGGTGAG CGCGTGGCTC
GACCTGGTGC GCGCCCAGGC CGGCATCGAC ACCCGCGCCG AGGTGGTGAG CGCGAACGAC
TTCCCGACCG CCTCGGGGCT GGCGTCATCG GCCTCGGCCT ACGCCGCGCT GGCGCTGGCG
GCGACGCGCG CTGCCGGCCT CACGCTCGAC CAGCGCGCGC TCAGCATCCT GGCCCGGCGC
GGCTCGGGCT CGGCCGCGCG CTCGATCTAT GGCGGCTTCG TGCGCATGCA CGCCGGCGCG
CGCGACGACG GCAGCGACGC CTACGCCGAG GCGCTCGACG AGGCCGGCGA TTGGCCGCTG
CGCATGGTCG TGGCCGTGGT CGGCGGCGGC CAGAAGAAGA CCCACGGCTC GCGCGATGCC
ATGGAGCACT GCGCGGCCAC CTCGCCGCTC TACGCCGGCT GGCTGAGCTG CGTGCCCGGT
GACCTGGACA GCGCCGCGCG CGCCATCGCC GCCCGCGACT TCGACGCTCT CGGACAGGTG
TCCGAGGCCA ACGCCCTGGC CATGCACGCC GCCGCCCTGG CCTCGCGCCC GGCCATCGTC
TACTGGCAGC CGGCCACGCT CGCGTGCCTG AGCGAGGTGC GCGCGCTGCG CGAGCGCGGC
GTCGGCGCCT ACGCCACCAT GGACGCGGGC CCGCACGTCA AGGTGCTCAC GCGCGCGGAC
GACGCCGAGG CCGTGGCCGC CGCGATGCGC AGCGTGCCGG GCGTGAGTGA CATCATCACC
AGCACCAGCG GCGGCGGCGC CCGTGTGCTC GAGGCCGATG GCGCCGGCGC CTGA
|
|---|
| Protein sequence | MSSPHGAARA RAHANIALIK YWGKRDRARN LPAAGSLSLT LAALTTTTSV RFDPALAGDR
LVLDHRVEDG KALARVSAWL DLVRAQAGID TRAEVVSAND FPTASGLASS ASAYAALALA
ATRAAGLTLD QRALSILARR GSGSAARSIY GGFVRMHAGA RDDGSDAYAE ALDEAGDWPL
RMVVAVVGGG QKKTHGSRDA MEHCAATSPL YAGWLSCVPG DLDSAARAIA ARDFDALGQV
SEANALAMHA AALASRPAIV YWQPATLACL SEVRALRERG VGAYATMDAG PHVKVLTRAD
DAEAVAAAMR SVPGVSDIIT STSGGGARVL EADGAGA
|
|---|
| |