Gene Hoch_3392 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_3392 
Symbol 
ID8545780 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp4688518 
End bp4689189 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content66% 
IMG OID646388059 
ProductMotA/TolQ/ExbB proton channel 
Protein accessionYP_003267787 
Protein GI262196578 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0811] Biopolymer transport proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0363447 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.327167 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGGGACT GGCTATCCGA AATTTTCCAG ACAGGTGGGC CGTTCTTCAT CGTCAACACC 
TTCTTCCTGG CGGTGGTGTT GGCCATCATC GTCGAGCGCG CCATCTACTT CCTGGGCCGC
GGGCACATCA ACGCCAAGGC CTTCCTCGAG CAGATCAAGC GCCTGCTCGC GGCCAACAAG
ATCGATCGCG CCAAGAAGCT GTGTGACGCC ACCACCGCCC CGGTCGCGCG CGTGGCCAAG
GCCGGCCTCA ACCGCATCCA TCGCGGCGAG GCCGCGGTCG CCCAGGCCAT GGAAGAGACC
ATGGTCGATG TCACCCCGGA GGTGAAGACG CGCATCTCGG CGCTGTGGTC GATGGCCAAC
ATCGTCACGC TCACCGGACT GCTCGGCACC ATCACGGGCC TCATCAACAC CTTCTCCGCG
GTCGCCGAGT CCAACCCGGC CGACCGCCAG CGCAACCTGT CCCTCGGCAT CTCCGAGGCC
ATGTACAACA CCGCCTACGG GCTGAGCATC GCGCTCATCT GCATGCTCGC CCACCTGATG
CTGAGCACCG CCATGAAGCG CGTGGTCGGC GATCTCGAGT CGTTCTCGCT GCGCCTCGAG
AACATGCTCG GCGAGGGCGG CGCCGTCTCG TCGAGCCGCG GCGTGGCCGG CCCCGGGGAC
GCGGCCGAGT GA
 
Protein sequence
MWDWLSEIFQ TGGPFFIVNT FFLAVVLAII VERAIYFLGR GHINAKAFLE QIKRLLAANK 
IDRAKKLCDA TTAPVARVAK AGLNRIHRGE AAVAQAMEET MVDVTPEVKT RISALWSMAN
IVTLTGLLGT ITGLINTFSA VAESNPADRQ RNLSLGISEA MYNTAYGLSI ALICMLAHLM
LSTAMKRVVG DLESFSLRLE NMLGEGGAVS SSRGVAGPGD AAE