Gene Hoch_3358 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_3358 
Symbol 
ID8545746 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp4647715 
End bp4649511 
Gene Length1797 bp 
Protein Length598 aa 
Translation table11 
GC content70% 
IMG OID646388025 
Producthypothetical protein 
Protein accessionYP_003267753 
Protein GI262196544 
COG category[S] Function unknown 
COG ID[COG4402] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03382] Myxococcales GC_trans_RRR domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0055195 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.200349 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCGTCCT CGCCTCGCCT CGTCCTCGCC GCCTCGCTCG GCCTCGCCGG CGCGCTCGCC 
CTGAGCGCGG CCAGCGGCCT CGCGCCGGTC CCTAGCGCCC ACGCCTGCGG CTGCTTTGCC
CAGTCCAACC CCACCGTGCC CGTGGTCCAG GGCGGCGAGC GCATCGTCTT CGCGGTGGAG
GATGGCGTGG TCACCGCCCA CGTGCAGATC CAATACAGCG GCGCCGCCGA GGAGTTCGCC
TGGCTGGTGC CGCTGCCGGC CGTGCCCACG CTCGACATCG GCACCGACGA GCTGTTCACC
ACGCTGCTCT CGGCGACCAC GCCGCGCTAC CGCGCATCGC TCGATATCGG CGAGTGCGGC
CCGGTCTCGT CGCCGGGGCC GACGCCGCCA CCGCCACCGG GCGATGACGA TCTGGTCGTC
GGCCGCGAGG TGGTCGGCCC CTTCGAGACC GCGATCCTGC GCGCCGACGA AAAACAGCCT
TTGCTCGACT GGCTGTCCGA TAACCGCTTC TTCGTGCCCG CCGGCACCGA CGCGATCATC
GACCCCTACA TCAAGGAGGG CGCCTACTTC CTGGCGCTCA AGCTCGCGAC CGGCAACGAC
GCCGGCGATC TCCAGCCCAT CGTGTTCTCC TACGCCTCGG AGCTGCCCCA GATCCCGATC
GTGCTCACCA GCATCGGCGC CGAACCCGAC ATGCCCGTGG TGGTCTGGGT GCTGGGCGAG
CACCGCGCGG TCCCGCGCAA CTTCGCCCAC GTGGTGCTCA ACGACGCGCG CATCGACTGG
ATCACCAATG GCAGCAACTA CCTCGAGCTG GTCTCCGAGG CCATCGACGA GGCCGACGAT
CACCACGCCT TCGTCACGGA GAACGCGGGC ACGATCAACT CGCTGCGCGG CCAGCTCGAT
CCCGACGGCC GCTTCGGCGA CCGCGCGCTT CTGCGGCAGA TCGACGACCC CGCCGCGTAC
CTCGAGTACC TGTTCGAAAA CGGCTACACG CAGCCGGCGG CGCCCGGCAC CGTGACCCTC
AGCACCCAGC TCATCTCGCT GCTCGACGCC CACCTGCCGC TGCCCCAGGA GCTGGTCGAT
GCGGTGAGCG AGGACAGCGG CGTCACCATC GGGCCCGGCG ACCTGTACAT CGCGTACCGC
GACTATCGCG AGCAGTATCC CGATATCGTC GGCCCGGCGC ACGCCGACTT CGACCCCGCC
GCGCTCACCG ATCTGCTCGA GGAGCGCGTC GTCGAGCCCA CCTTGGCCGC GGGCCAACTG
TTCCGAGACC ACAATTACAT CACGCGCCTG TTCACGATGC TGTCGCCCGA GGAGATGACC
AAAGACCCGG TGTTCAGCTT CAACCCGGAC CTGCCCACGG TCTCGCGCTC CCACTCCGCC
TCGCGGCTGG TGCTCGAGTG CGACGTGGAG TACTACAACT ACCCGAACAC CGACGGGCCC
GGCCTGCTCA CGACCGAACA GGGATGGGAG CTCTTTGTGC CCCGCCTCGG GGAGAATGAC
TGGGTCGACG TGGAGATGCC GGCGAGCCTG CGCATCGAGA TACTGCGCGA GGAGGGCGCG
CCGGTGACCG TGGTCGATAA CAGCGCGCTC ATCGCCGAGC GCATCGCGGC GTATCGCACG
CTGCCGCCCG AGTACCTGCC CTCCCCCGAT CCGGTTGACC CGGTTGACCC AGTGGACGAG
GACGACGCAG GCGGCTGCTC GACGAGCCCG AGCCGCGCGC CCGCAGGTGG CGCCCTGGTG
CTCGCCGCCG GGGTGCTGCT GAGCCTGCGC CGCCGCCGCG CTCGCGTCCG GGCCTGA
 
Protein sequence
MPSSPRLVLA ASLGLAGALA LSAASGLAPV PSAHACGCFA QSNPTVPVVQ GGERIVFAVE 
DGVVTAHVQI QYSGAAEEFA WLVPLPAVPT LDIGTDELFT TLLSATTPRY RASLDIGECG
PVSSPGPTPP PPPGDDDLVV GREVVGPFET AILRADEKQP LLDWLSDNRF FVPAGTDAII
DPYIKEGAYF LALKLATGND AGDLQPIVFS YASELPQIPI VLTSIGAEPD MPVVVWVLGE
HRAVPRNFAH VVLNDARIDW ITNGSNYLEL VSEAIDEADD HHAFVTENAG TINSLRGQLD
PDGRFGDRAL LRQIDDPAAY LEYLFENGYT QPAAPGTVTL STQLISLLDA HLPLPQELVD
AVSEDSGVTI GPGDLYIAYR DYREQYPDIV GPAHADFDPA ALTDLLEERV VEPTLAAGQL
FRDHNYITRL FTMLSPEEMT KDPVFSFNPD LPTVSRSHSA SRLVLECDVE YYNYPNTDGP
GLLTTEQGWE LFVPRLGEND WVDVEMPASL RIEILREEGA PVTVVDNSAL IAERIAAYRT
LPPEYLPSPD PVDPVDPVDE DDAGGCSTSP SRAPAGGALV LAAGVLLSLR RRRARVRA