Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hoch_3317 |
Symbol | |
ID | 8545705 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haliangium ochraceum DSM 14365 |
Kingdom | Bacteria |
Replicon accession | NC_013440 |
Strand | + |
Start bp | 4576802 |
End bp | 4579237 |
Gene Length | 2436 bp |
Protein Length | 811 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 646387984 |
Product | Protein of unknown function DUF1592 |
Protein accession | YP_003267712 |
Protein GI | 262196503 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG5297] Cellobiohydrolase A (1,4-beta-cellobiosidase A) |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0474144 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGACTGGAC ATGTGTCCCA AAAACAAACT GATTTCGCGA CCGCTGCGCC CGCGCGCGGC GGCCTGCGCT TCCCCTCTCT GACCATGACG CTGGCGCTGG GCCTGGGCCT GAGCGCTGCG GCGCTGAGCG GCTGCGACGG CGCCGCGGAC GACGGCCCGG GCGCTGCGCC CGAGAGCCCG TGCCCGCCCG ATCAGGAGTA TTTCGTCGAG AACATCTGGA CGCCGATCGT GTCGCTCTCG TGCATCTCGT GCCACAGCGA CACCGGCGCG GCCAAGAGCT CGCGCCTGGT GCTGCGCGAG CCCACCGAGC CCGACTTCCT CAGCGAGAAC TTCGCCATCA TGCGCGCGCT CGCGGCCGAG GAGGAGGGCG GCACCTCGAT CCTGCTGTCG CGGCCCAGCG GCCGCCACCC GAGCGGCCAC CCCGGCGGCG TGCTGTTCGA CATCGGCACC ATCGACTACG AGGCCATGGC CGCGTTCGTC GGACGCGTGG TCGGTGACCC CGAGGCGTGC GAGAGCGCGC TCGATAGCTG CGAGAGCGGC ACGCCCGGCC CGCGCATGCT GCGCCGGCTG AGCCGCTCGG AGTACGATCG CACCATCGTC GATCTGCTCG GCATCGAGGG CACATACGGC AAGAGCTTCG CCGCCGATAC CGTGGTCAAC GGTTTTGACA ACAACGCCGC GGCCTTGACC GTGACCCCGC TGCTCGCCGA CCAGGTGCGC AAGGCGGCCG AGTCGCTGGC CGCCGAGGCC ATGGCCAACC CGGGCGCGAT CGTGCCCTGC GCGGCCAGCG AGGGCCGCGC GTGCGCGCGC AGCTTCCTCG AGAGTTTCGG CGAGCGCGCG TTCCGCCGGC CGCTGAGCGA GGACGAGATC ACAGGCTATC TCGGCATCTA CGATCTCGGC GACGAGGACG GCGACGGCGC GGTGTCCGAG GGCGAGTTCC CGGGCGCCAT GGAGGTGGTG CTGTCGGCGC TCTTGCAGTC GCCGAGCTTC CTCTACCGCC CCGAGCTGGG CACGAGCGTG GGCGACGGCG CCTACGCGCT GTCGTCATAC GAGATCGCGT CTGAGCTGTC GTACTTCCTG TGGGGCTCGA TGCCCGATGA GGAGCTGCTG GCGGCCGCGC GCGAGGACGC GCTGCGCGAT CCGGCCGAGA TCGAGAGCCA GGCCCGGCGC ATGCTGGCCT CGCCCAAGGC GCGCTTTGCC ATCGATCGCT TCACCGAGCA GTGGCTGGGC ATCGATCAGC TCGCCACGGT GCCCAAGGAC ACCATGCTGT TCCCCGAGCT CACGCCCGAG CTGCGCCAGT CGATGCTGGT CGAGGCGCAG AGCCTGGTGG CCGATATCAT CGCCGAGGGC GGCTCGCTGG GCGAGCTCTT GCGCGCCTCG CACACCTTCC TCGACCAGCG CCTGGCCGAC TTCTACGGTC TGCCGGCGCC CGCCGAGGCC GGCGCGGGCG GTTTCGGACG CGTGGACCTG GGCGGCAGCG AGCGCGGTGG TCTGCTCACC CTGGGCGCGA TCCTCACCAC CCACGCGCGC TCCAACGGCA CCTCGCCCAT CCACCGCGGC AAGCTGGTGC GCGAGCGCCT GCTGTGCCAG CACCTGCCGC CGCCGCCGCC GGGCGTCAAC GCCGAGCCGC CGGCCCTCGA CCCCGGCCTG ACCACGCGCG AGCGCTACCG CCAGCACTCG GTGGACGAGG CCTGCGCCGG CTGTCACGAG CTCATGGACC CCATCGGCTT TGGCTTCGAG CACTTCGACG GCATCGGCCG CTTCCGGGCC GACGAGGGCG GGCTGGCCAT CGACGCCAGC GGCTACGTGA GCGGCGTGGG CGAGAAGAAT CTGGAATTTG ACGGCGTGGA CGATCTCGCC GCGCAGCTCG CCGGCAGCCC CGAGGCGCAC GCCTGCTTTG CCCTGCAGTG GACGCGCTTT GCCTACGGCG TGCGCGAGAA CAGCCAGCTC TCGTGCCTGG TCGACGACGT CGCCGCGCAG CTCACGCCCG ACACCCGGCT CGACGACTTC ATCGTGTCGC TGGCGCTCAG CTCGCACTTC ACCGCCCGCG TCGGCAAGGA CGCGGCGCCC GGCGAGGAGC CCGGCGATGG TGGCGAGGAC CCGGGCGACG GCGGCGAGGA CCCGGGCGAC GGCGGCGAGG ACCCGGGCGA CGGCGGCGAG GACCCGGGCG ACGGCGGCAG CTCTGACGAT CTTGGCGTCG CCGTGGTCAC CGACTCGATG TGGGCGACCG GCGCGTGCTA CTCGGTCACC GTGACCAACG AGAGCGACGC CGAGCTCGAC TGGCAGATCA CGCTGAGCGT GGCCGGCGAG ATCAACAACC ACTGGAACGC CACGCTCACG CAGACCGGCA ATCAGGCGCA GTTTGGCGGC GTGGACTTCA ACGACCGCAT CGCGCCCGGC GCCACGGCCT CGTTCGGCTT CTGCGAGGCC TTCTGA
|
Protein sequence | MTGHVSQKQT DFATAAPARG GLRFPSLTMT LALGLGLSAA ALSGCDGAAD DGPGAAPESP CPPDQEYFVE NIWTPIVSLS CISCHSDTGA AKSSRLVLRE PTEPDFLSEN FAIMRALAAE EEGGTSILLS RPSGRHPSGH PGGVLFDIGT IDYEAMAAFV GRVVGDPEAC ESALDSCESG TPGPRMLRRL SRSEYDRTIV DLLGIEGTYG KSFAADTVVN GFDNNAAALT VTPLLADQVR KAAESLAAEA MANPGAIVPC AASEGRACAR SFLESFGERA FRRPLSEDEI TGYLGIYDLG DEDGDGAVSE GEFPGAMEVV LSALLQSPSF LYRPELGTSV GDGAYALSSY EIASELSYFL WGSMPDEELL AAAREDALRD PAEIESQARR MLASPKARFA IDRFTEQWLG IDQLATVPKD TMLFPELTPE LRQSMLVEAQ SLVADIIAEG GSLGELLRAS HTFLDQRLAD FYGLPAPAEA GAGGFGRVDL GGSERGGLLT LGAILTTHAR SNGTSPIHRG KLVRERLLCQ HLPPPPPGVN AEPPALDPGL TTRERYRQHS VDEACAGCHE LMDPIGFGFE HFDGIGRFRA DEGGLAIDAS GYVSGVGEKN LEFDGVDDLA AQLAGSPEAH ACFALQWTRF AYGVRENSQL SCLVDDVAAQ LTPDTRLDDF IVSLALSSHF TARVGKDAAP GEEPGDGGED PGDGGEDPGD GGEDPGDGGE DPGDGGSSDD LGVAVVTDSM WATGACYSVT VTNESDAELD WQITLSVAGE INNHWNATLT QTGNQAQFGG VDFNDRIAPG ATASFGFCEA F
|
| |