| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3285 |
|---|
| Symbol | |
|---|
| ID | 8545673 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 4529946 |
|---|
| End bp | 4530767 |
|---|
| Gene Length | 822 bp |
|---|
| Protein Length | 273 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 646387952 |
|---|
| Product | transcriptional regulator, BadM/Rrf2 family |
|---|
| Protein accession | YP_003267680 |
|---|
| Protein GI | 262196471 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1959] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR00738] rrf2 family protein (putative transcriptional regulator)
[TIGR02944] FeS assembly SUF system regulator, gammaproteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.794723 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.278795 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTGCG GGAAACGGTA CCCATCCGGT ACCTATTACG CTAAGAATCT GATCATGCTG
CGCATTTCCA AGATGACGGA CTACGCCGTC GCCCTCACCT CGCACCTGGC GCAACACGCC
GAACCGAGGG CGAAGGCGCG CGCAGCCGCC GGCGAGGGGT CGGCCCGAGA TCCCGCTGAA
TCGCAGATCG CCAGCAAAAA CGCCAGCGAT CGCGACGCCT CGACGGCGAC TCGCGCGGGC
GACGTCGCCC ATCGCGCCGG CGAGGGAGGC ACCCACCAGA GCGTGCGCGC GCTGGCCGCG
GCCACGGGAA TCCCCGAGCC CACGGTGCGC AAAGTACTCA AGACCCTGGT GCGCGCCGGC
GTCGTCGGCT CGGTGCGCGG CACCCACGGC GGCTACGCCT TGGCGCGCCC GGCCAGCGCC
ATCAGCGTCG CCGAGGTCGC CACCGCCTTC GAGGGTCCCA TCGCCGTCAC CGAGTGCGCC
AGCGAGGAGA CGGTGGGAAC CTGCGGCCTC GAGGATCGCT GCACGGTCAA GGGTCCCTGG
CAGCGCATCA GCGAGGTCAT CCGCGACGCG CTCGAAGGGC TCAGCCTGGC GCAGATGTCG
TCGCCCGCCA TCGCGGAGGC GCAGACGATG CCGGTCGAGG CGCTGCTGCG GCGCACCCGC
AAAGCCGCTG ACTCGCCCTC GCTGGGCGTG CTCTCGCCCG CGGTCGGCGC GTCATCGAGC
CGCGCCGGCA GCGCTCCCCC TGCGAGCGGC AAACCCGCTC TGACTACCGA CGAAAACGCC
GCGCCCCAAG GCAGCGACGA TCCCTTTGGC CCGATCCCCT GA
|
|---|
| Protein sequence | MVCGKRYPSG TYYAKNLIML RISKMTDYAV ALTSHLAQHA EPRAKARAAA GEGSARDPAE
SQIASKNASD RDASTATRAG DVAHRAGEGG THQSVRALAA ATGIPEPTVR KVLKTLVRAG
VVGSVRGTHG GYALARPASA ISVAEVATAF EGPIAVTECA SEETVGTCGL EDRCTVKGPW
QRISEVIRDA LEGLSLAQMS SPAIAEAQTM PVEALLRRTR KAADSPSLGV LSPAVGASSS
RAGSAPPASG KPALTTDENA APQGSDDPFG PIP
|
|---|
| |