| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3260 |
|---|
| Symbol | |
|---|
| ID | 8545648 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 4493189 |
|---|
| End bp | 4495900 |
|---|
| Gene Length | 2712 bp |
|---|
| Protein Length | 903 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 646387927 |
|---|
| Product | von Willebrand factor type A |
|---|
| Protein accession | YP_003267655 |
|---|
| Protein GI | 262196446 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2425] Uncharacterized protein containing a von Willebrand factor type A (vWA) domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0740764 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGACG TTTCCAAACG CCTCCTCCTC GGCGTCGTCC TCGGCCTGCT CTGCGCCGCC
GCCATCGCCT TCGGCATCGA TCTCTGGCTG GCGCCGCGCG CCGGCGCGGT GGTGCTGAAC
TGGGGCGAGC GGCCGATCGA GCTGCTGGAG CCGAGCTGGC TCTACCTCAT CGCGCTCGCG
CCCTTCTTCT TCGTCGTCCG CGGCTACTCG CTCACCGATC TATCGACCGC GCAGCAGCTC
GTGCAATCGG CGCTGCGCGC GCTGCTGCTG GTCGGCATCG CGGCCGCCCT GGCGCGGCCG
GCGTGGACCA CCGAGGACGA CAAGGTGGCC ACGGTGGTGC TGGTCGATGT CAGCGACTCG
GTGAGCGACG CCCAGCTCGA CGCCGCCCGC GCCTACGTGG GCGAGCTGTC CGCGGCCAAG
CGCGACGATG ATGCTCTGTA CGTGGTCAGC TTTGCCCAGC GGCCGCTGCG GGTACCGGCC
ACGGCCGAGG GCGGCTTCGC CATCGAGCGC CACCCGGACG AGGGCGCGGG CACCGACATC
CAGGCCGCGG TGCAGCTCGC CTACGGCCTG TACCCGGCCG GCTACGTGCC GCACCTGGTG
GTGGTGAGCG ACGGCAACCA GACCGGCGGC GACCTGCTCA GCGAGGCCTA CCGGGCCGAG
GAGCTGGGCG TGCGGCTGTC GTGGCAGAGC TTCCCCGAGC AGCGGGTGCA GGAGATCCGC
GTGGTCGGCC TGCGCATCCC GGACGAGGTC AAGGTCGGCG CGCCCTTCGA GGTCACGGCC
GAGGTGTGGT CCACGCACGA GGAGGAGGTG ACGCTCACCC TGGCCCAGGA CGCGTTCCCC
AACCCGCTCG AGCCGCGCAA GCGCGTGACC CTGCGCGAGG GCGTCAACCG CATCCCGTTC
AAGTCGCAGG CGACCCGGGC CGGCTTCACC AGCTACCGCC TGCGCCTGGT GGACGCCGCC
GGCGACACCG AGAAAGAGAA CAACGAGGCG CTGATGACCA CGCCGGTCAA GGGCCGGCCC
AGCGTGCTCT ACGTCGAGGG CAGCGCCATG AGCGACCCGT CGACCGCGCG CTACTTCGAG
CGCGCCCTCG AGGGCGAGAA CATCGACGTC GAGGTGCGCG GCCCGCGCGG GCTGCCGTCC
TCGGCCAAGG AGCTCGAGCG CTTCGACCTG GTGCTGGTCT CGGACGTGCC GGCGCAGTTT
TTGGGCATGG GCCAGATGGC CGCGCTCGAG AGCTACGTGC GCGACCTCGG CGGCGGCTTG
ATCATGGCCG GCGGCGAGGA CTCCTTCGGC TCGGGCGGCT ACCAGGGCAC GCGCATCGAG
AAGATCATGC CGGTGCGCTT CGACTCGGAG AAACAGCGCG AGCAGCCGCA CGTGGCCATC
GCGCTGGTGG TCGATCGCTC GGGCTCGATG TCGGGGCTCA AGATCGAGGC GGCCAAGGAG
TCGGCGCGGG CCACGGCCGA GGTGCTCTCG CCCTCGGACC TCATCACCGT GGTCGCCTTC
GACAACCAGC CGACCACCAT CGTGCGCCTG CAGCGGGCCT CGAACCGCAT GCGCATCGCC
ACCGATATCG CCCGGCTACA GGCCGGCGGC GGCACCAACA TCTACCCGGC GCTGCGCGAG
GCCTACGAGA TCCTCCAGGG CGCCAACGCC AAGGTCAAAC ACGTCATCGT GCTCAGCGAC
GGCCAGGCGC CCTACGACGG CATCGCCGAC CTGTGCCAGG AGATGCGCAG CGCGCGCATC
ACGGTCTCGG CCGTGGGCAT CGGCGACGCC GATCGCAACC TGCTCAATCT CATCACCGAC
AACGGCGACG GCCGCCTGTA CATGACCGAC GACCTGGCCG CGCTGCCGCG CATCTTCATG
AAGGAGACCA CCGAGGCCCA GCGCTCGGCC CTGGTCGAGT CGCCGGTGCG CGCGCACGTG
CTCAAGCGGG TGGAGATGAT CGAGGGCACC GGGGTCGAGA ACGCGCCGCT GCTGCGCGGC
TACGTGACCA CCAAGCCCAA ACCGCGCAGC GAGGTCATCC TGGTGAGCGA CCTGGGCGAG
CCCATCCTGG CCCGCTGGCG CGTGGGCACG GGCACCAGCG TGGCCTGGAC CAGCGACGTC
AAGAACCGCT GGAGCGTGGA CTGGATCCGC TGGAACGGCT TTCCCAAGTT CTGGGCCCAG
GTGGTGCGCA CGAGCATGCG CAGCAAGGTG CACGAGAGCT ACGATCTGCG CGCCGCGGTC
GACAGCGGGC GCGCCGAGGT GGTGGTCGAC GCCATCGACG TCGACGACCA GTTCGTCGAC
CAGCTCGACA CCACGCTCGA GGTCATCGAC CCGCGCGACT CGCAGGTGGT GCGCACGCTG
CCCATGGAGC AGACCGCGGC CGGGCGCTAC GCGGCCGACT TCACCATGGA CCGCTACGGC
AGCTACATGC TCAAGGCCGT GCACCGCCGC GAGGGCCGCG TGGTCGCCGA GTCGATGGGC
GCGGTGGCGC TGTCGTATCC GCTCGAGTAT CTCAAGACCA CGCCCGACAC CACCGCGCTG
GCGCAGGCGG CCGCGGTCAC CGGCGGTCTC GATCAGCCGC CGCCGACGCA GGTGTTCGAC
GCCGCCGGCC AGACCATCGA GTACACCGAG GATCTGTGGC CCTGGGTGCT GCTCTTGGTC
GCCTGCCTGC TCATCCTCGA TCTGTACTTC AAGCGCCTGC GCATGTTCGG CTACCGCACG
CTCAAGCTGT AG
|
|---|
| Protein sequence | MRDVSKRLLL GVVLGLLCAA AIAFGIDLWL APRAGAVVLN WGERPIELLE PSWLYLIALA
PFFFVVRGYS LTDLSTAQQL VQSALRALLL VGIAAALARP AWTTEDDKVA TVVLVDVSDS
VSDAQLDAAR AYVGELSAAK RDDDALYVVS FAQRPLRVPA TAEGGFAIER HPDEGAGTDI
QAAVQLAYGL YPAGYVPHLV VVSDGNQTGG DLLSEAYRAE ELGVRLSWQS FPEQRVQEIR
VVGLRIPDEV KVGAPFEVTA EVWSTHEEEV TLTLAQDAFP NPLEPRKRVT LREGVNRIPF
KSQATRAGFT SYRLRLVDAA GDTEKENNEA LMTTPVKGRP SVLYVEGSAM SDPSTARYFE
RALEGENIDV EVRGPRGLPS SAKELERFDL VLVSDVPAQF LGMGQMAALE SYVRDLGGGL
IMAGGEDSFG SGGYQGTRIE KIMPVRFDSE KQREQPHVAI ALVVDRSGSM SGLKIEAAKE
SARATAEVLS PSDLITVVAF DNQPTTIVRL QRASNRMRIA TDIARLQAGG GTNIYPALRE
AYEILQGANA KVKHVIVLSD GQAPYDGIAD LCQEMRSARI TVSAVGIGDA DRNLLNLITD
NGDGRLYMTD DLAALPRIFM KETTEAQRSA LVESPVRAHV LKRVEMIEGT GVENAPLLRG
YVTTKPKPRS EVILVSDLGE PILARWRVGT GTSVAWTSDV KNRWSVDWIR WNGFPKFWAQ
VVRTSMRSKV HESYDLRAAV DSGRAEVVVD AIDVDDQFVD QLDTTLEVID PRDSQVVRTL
PMEQTAAGRY AADFTMDRYG SYMLKAVHRR EGRVVAESMG AVALSYPLEY LKTTPDTTAL
AQAAAVTGGL DQPPPTQVFD AAGQTIEYTE DLWPWVLLLV ACLLILDLYF KRLRMFGYRT
LKL
|
|---|
| |