| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3216 |
|---|
| Symbol | |
|---|
| ID | 8545604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 4431936 |
|---|
| End bp | 4433018 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 646387883 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_003267611 |
|---|
| Protein GI | 262196402 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.506058 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0549316 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGGAAT CCTCGCAACG CCAGTCGTCT GGCGCACATG ACGGCGCTTC GGCGGATTCG
CGAGAGCGCC TCCGCAGGCC GCCCCGCGGC GGTCGCGTGG TCGCCATTAC CGGCGCCTGT
AGTTTCCTCG GCGGCGAGCT GCTCAAGCGT CTCGAAGAGG ACCCGAACTA CGAGCGCGTC
CTCGCCCTCG ACATCCGCCG TCCGGCCGTG GTGTTGGAGA AGGCCGAGTA TCACGAGATC
GACCTCACCG TGCCCAGCGT CGACCGCAGC TTGGCGGCGC TGTTCGAGGA CTGCCGGGTC
GACACCGTGG TCCACGCCGC CTTTCTGTCG TTCCCCACCC ACGCCGCCGA GTGGGCGCAC
GAGCTCGAGG ACATCGGCAC CATGCACGTC CTCAACGCCT GCGCCCAGGC TCGGCCCGCG
CGCCTGATCA TGACCTCGAC CACGCTGGTC TACGGCGCCG CGCCCGACAA TCCCAACTTC
CTCAGCGAGC GCGATCCCCT GCGCGAGGCC CACCCCGCCG CCGACGCGCG CTTCATCGAC
GACAAGGTCA ACGCCGAGAA GCAGCTCGCC CAGTTCGCCG ACGAGCACCC CGAGATCCAG
GTCGCCGTGC TGCGCTTCGC GCCGATTCTC GGACCGACGG TCCAAAACCT GTTCACGCGC
TACTTCTCGC GGCCGCTGGC CGTGGCCCTG CTCGGCCACG ACCCCCTGAT CCAGCTCGTG
CACGAGAGCG ACGCCGCCAA CGCGCTGGCT CTGGCCGTGG AGCGCGACGT CGAGGGGCCG
CTGAACATCG TCGGCCACGG CGTGCTGCCG TATCGCACGG TGCTGGCCCT GCTCGGCCGC
ATGCCGCTCA CCGTGCCGCT GTTTCTGGCG CGTCCGCTGC ACCGGGCGCT GTGGGTCACC
CAGCTCTTCG ACGCGCCGCC GAGCTTTCTC GATTTCCTGC GCTTCCTGTG CGTGGCCGAT
GGCACCCGGG CCCGTCGCGA GCTCGGCTTT CAGCCGCATT TCGACGTCCA GCGCACGCTC
ATGGACTTTC TCGGTATCGC GGCCGATGAC GGCGCGCCCG ATCCGATCCA CGCCCAGGGG
TAG
|
|---|
| Protein sequence | MGESSQRQSS GAHDGASADS RERLRRPPRG GRVVAITGAC SFLGGELLKR LEEDPNYERV
LALDIRRPAV VLEKAEYHEI DLTVPSVDRS LAALFEDCRV DTVVHAAFLS FPTHAAEWAH
ELEDIGTMHV LNACAQARPA RLIMTSTTLV YGAAPDNPNF LSERDPLREA HPAADARFID
DKVNAEKQLA QFADEHPEIQ VAVLRFAPIL GPTVQNLFTR YFSRPLAVAL LGHDPLIQLV
HESDAANALA LAVERDVEGP LNIVGHGVLP YRTVLALLGR MPLTVPLFLA RPLHRALWVT
QLFDAPPSFL DFLRFLCVAD GTRARRELGF QPHFDVQRTL MDFLGIAADD GAPDPIHAQG
|
|---|
| |