Gene Hoch_3138 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_3138 
Symbol 
ID8545526 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp4314845 
End bp4315606 
Gene Length762 bp 
Protein Length253 aa 
Translation table11 
GC content62% 
IMG OID646387805 
ProductABC-2 type transporter 
Protein accessionYP_003267533 
Protein GI262196324 
COG category[V] Defense mechanisms 
COG ID[COG0842] ABC-type multidrug transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00549881 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.763555 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACTGGT ACGGCGTTCG CGCGATTTAC CGCTTCGAGA TGGCGCGCAC CTTTCGCACC 
ATCACCCAGA GCCTGGCCTC GCCCGTGCTC TCGACCTCGC TCTACTTCGT CGTCTTCGGC
ACCGCCATCG GCGGCCGCGT CGGCGATATC GACGGCGTGA GCTACGGCGC CTTCATCATC
CCCGGTCTCA TCATGCTCTC GCTGCTGAGC GAGAGCATCT CCAACGCCTC CTTTGGCATC
TACATGCCCA AGTGGTCGGG AACCATCTAC GAGCTGTTGT CGGCGCCGGT GTCGTATGTC
GAAGTGCTGC TCGGCTACGT CGGCGCGGCG GCGACCAAAT CGATGCTCAT CGGCCTGCTC
ATCCTGGCCA CGGCGCGGGT CTTCGTGCCC TACGAGATCG CCCATCCGCT GTGGATGCTG
TGCTTTCTGC TGCTCACCTC GGTGAGCTTC AGTCTGTTTG GATTCATCAT CGGTTTGTGG
GCCGATGACT TCCAGAAGCT GCAGGTGATT CCGCTGATGG TGGTCACCCC GCTCACCTTC
CTCGGCGGCG CCTTCTACTC CATCGAGATG CTGTCGCCGA CCTGGCAGAC CATCGCGCTC
TTCAACCCGG TGGTGTACTT GATCAGCGGC TTCCGCTGGA GCTTCTACGA GATTTCGGAC
GTCAACGTCG CCATCAGCGC GGGCGCCATC CTGGGCTTCT TGGTGGTGTG CCTGGTCGCG
GTCTGGTGGG TGTTCAAGAC CGGCTGGAAG CTCAAAGCCT GA
 
Protein sequence
MNWYGVRAIY RFEMARTFRT ITQSLASPVL STSLYFVVFG TAIGGRVGDI DGVSYGAFII 
PGLIMLSLLS ESISNASFGI YMPKWSGTIY ELLSAPVSYV EVLLGYVGAA ATKSMLIGLL
ILATARVFVP YEIAHPLWML CFLLLTSVSF SLFGFIIGLW ADDFQKLQVI PLMVVTPLTF
LGGAFYSIEM LSPTWQTIAL FNPVVYLISG FRWSFYEISD VNVAISAGAI LGFLVVCLVA
VWWVFKTGWK LKA