| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3120 |
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| Symbol | |
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| ID | 8545508 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | + |
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| Start bp | 4294003 |
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| End bp | 4295730 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 646387787 |
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| Product | putative circadian clock protein, KaiC |
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| Protein accession | YP_003267515 |
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| Protein GI | 262196306 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0467] RecA-superfamily ATPases implicated in signal transduction |
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| TIGRFAM ID | [TIGR02655] circadian clock protein KaiC |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.374294 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.928661 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCCGACG TAACGAATGA CCCGAGCTCT GGGCCGCCCC CTAAACTCGC CAAGGCCAGC
AGCGGCACCG ATGGCCTCGA CGAGATCCTC AGCGGCGGTC TGCCGCGCGG CCGGCCGACC
CTGGTGTGCG GCGCCGCCGG CTGCGGCAAG ACGCTGATGG GTATGCAGTT TCTGGTGCGC
GGTGCGCTCG AGTACGGCGA GCCCGGCGCG TTCATCGCGT TCGAGGAGCG GGTCGAGGAT
CTGCACGCCA ATGTCGCCTC CCTGGGCTTC AATCTAGCCG AGCTGGAGAG CCGCGGTCTG
CTGTCCATCG ACCACATCCA GGTCGATCCC AGCACCATCA TCGAGAGCGG CGACTATGAC
CTCAGCGGCC TGTTCATCCG CCTGGGCCTG GCCATCGACA GCGTCGGCGC CAAGCGCGTG
GTCATCGACA CTCTCGAGAC CCTGTTCGGA GGGCTGTCCA ACTACGCTAT CGTGCGCGCC
GAGCTGCGGC GCCTGTTCGA CTGGCTCAAG GAGCGCGGGG TCACCGCGAT CATCACCGCC
GAGCGCGGCG ACAACGCGCT CACGCGCTAC GGGCTCGAGG AATACGTCTC CGACTGCGTG
ATCATCTTGG ATCATCGGGT CGTCGACCAG GTGTCCACGC GCCGGCTGCG CGTGGTCAAA
TACCGCGGCT CGGTGCACGG CACCAACGAG TATCCCTTCC TCATCGACGA GGACGGGATC
TCGGTGTTGC CGATCACCAG CGCCGGCCTC GACCACCAGG TCTCGGACGA GCGGGTGCCG
AGCGGGGTCG CGCGTCTCGA CGCCATGCTC GGCGGCGCCG GCTACTACCG CGGCAGCACG
GTGCTGCTCT CGGGCACCGC CGGCGCGGGC AAGTCGAGCC TGGCTGCGTA TTTTGCCAAC
GCTGTCTGCG GCCATGGCGA GCGCGCGCTG TACTTCTCCT TCGAGGAGTC GCCGACCCAG
ATCCTGCGCA ACACCAAGAC CATCGGGCTC GACCTGCAGC GCTGGATCGA CGGCGATCTG
CTGCGCTTCG TGGCCGCGCG GCCGACCGCG CACGGCATCG AGACCCACCT GGCGCTGCTG
CACCGGCACA TTCGCCGGTT CGAGCCCGCG GCCGTGATCA TCGATCCGGT GAGCAATCTG
CTCGTGGCCG GCAATGAGCA CGCGGCCGCC GGGATGCTGG TTCGGCTCAT CGACTTCCTC
AAGGCGCGCG GCATCACCGC GCTGCTCACC TCGCTCACCC AGGGCGGCGA GGTGCTCGAG
GCCACCAACA CGGCGATCTC GTCGATCGTC GACACCTGGC TGCTGCTCAA GACCATCGAG
CTGGCCGGTG AGCGCAACAA GGGCATCTAC GTGCTCAAAT CGCGTGGTAT GGCGCACTCC
AACCAGATCC GCGAGTTTGC CATCACCTCG CGCGGCATCG AGCTCACCGA CGTCTACGTC
GGCCTCGAGG GCGTGCTCAC CGGCTCGGCG CGGGCGGCGC AGGAGGCGCG CGAGCGCGAG
CAGGCGCGGC GCCGGGAGCG CGAGATCGAG CTCAAGCGCC GACAACTGGT GCGCCTCGAG
GCGCTGCACC GCGAACAGAT GGCCAAGCTG ACGGCCGATT TCGAGAGCCA GTCGGCAGAG
CTGCAGGTGG CGATCGAGCA CGCCGAGACA GCGCAGCGAG AGCGCTTGCG AGATCTGCAG
CACATGGCAG AGTCTCGACA GGCCGACGAC GAGCAGGAGA CGCCATGA
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| Protein sequence | MSDVTNDPSS GPPPKLAKAS SGTDGLDEIL SGGLPRGRPT LVCGAAGCGK TLMGMQFLVR
GALEYGEPGA FIAFEERVED LHANVASLGF NLAELESRGL LSIDHIQVDP STIIESGDYD
LSGLFIRLGL AIDSVGAKRV VIDTLETLFG GLSNYAIVRA ELRRLFDWLK ERGVTAIITA
ERGDNALTRY GLEEYVSDCV IILDHRVVDQ VSTRRLRVVK YRGSVHGTNE YPFLIDEDGI
SVLPITSAGL DHQVSDERVP SGVARLDAML GGAGYYRGST VLLSGTAGAG KSSLAAYFAN
AVCGHGERAL YFSFEESPTQ ILRNTKTIGL DLQRWIDGDL LRFVAARPTA HGIETHLALL
HRHIRRFEPA AVIIDPVSNL LVAGNEHAAA GMLVRLIDFL KARGITALLT SLTQGGEVLE
ATNTAISSIV DTWLLLKTIE LAGERNKGIY VLKSRGMAHS NQIREFAITS RGIELTDVYV
GLEGVLTGSA RAAQEARERE QARRREREIE LKRRQLVRLE ALHREQMAKL TADFESQSAE
LQVAIEHAET AQRERLRDLQ HMAESRQADD EQETP
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