| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3116 |
|---|
| Symbol | |
|---|
| ID | 8545504 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 4289316 |
|---|
| End bp | 4290989 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 646387783 |
|---|
| Product | peptidase C14 caspase catalytic subunit p20 |
|---|
| Protein accession | YP_003267511 |
|---|
| Protein GI | 262196302 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4249] Uncharacterized protein containing caspase domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.964614 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCGA ACGACCAGCC CAACGCGTGC ACGCGGTCGC CGCAGCGCCA CGCGCTGCAG
CGCCACGCGC TGCTCGTGGC CATCGTCGGC GCGGCGCTGC TGTGGCCGGC GCAGGCGCTG
GCGCAGGTGC AGCGCTTCGC CGTGATCATC GGCAACAACC TGGGGGGCCC GGAGGACGTC
ACCCTGCGCT ACGCCGAGGA CGACGCCACC AAGGTCTACG AGGTTCTCGA ACACCTGGGC
GGATTCCGTC CCGAGGACAT GCTGCTGCTC CGCGGCCGCA GCGCCGACGA GGTGCGCGAC
GCGCTGATCT CGCTCAACGA GCGCATCCGG CGCCGCTCCA GTCGCGGCCG CGGCGACGCC
ATGTTGCTGG TGTACTACTC GGGCCACGCC GACGCGCGCG CGCTGCACCT GGGCGACGAT
GAATTGTCGC TGCGCCAGGT CGAGCAGCTC GTCACCGGCT CGGCGGCCGC GTTTCGCGTG
CTGGTGCTCG ACGCCTGCCG CTCGGGCGCG CTCACGCGGG TCAAGGGCGG GCGCCGCGGC
CCGCCGGTGG CGATCACGCT CGAGGACGAA CTGGCGGGCG AGGGCACGGT GTTCTTGACC
GCCAGCGCCG CCGACGAGGA CGCGCAGGAG TCAGACGCCA TCCGCGGCTC GTTTTTCACG
CATTACCTGG TGTCGGGCCT GATCGGCGCC GCCGACCAGA ACCGCGACGG CCGCGTGGTG
CTCGAGGAGG CCTATCGCTA CGCCTACGAG CACACCCTGC GAGCCTCGAG CCGCACCCTG
GCCGGCACCC AGCACCCGAC CTTTCGCTAC GACATGCGCG GTCAGGGGCT GGTGGTGCTC
ACCGAGGTCG TGCCCCAGCG GCAGCGCGCG CTGGTGCATC TGCCGGCCGG GCGCTCGTAC
CTGCTGCTGC GCAATGGCGC CGACGGGCCG GTCGCGGCCG AGGTCGGCGC GCGCGACAAG
GTGCGCCGCA TCAGCCTGGC CGCCGGGCGT TACTTCGTGC GCGCGCGCGC GCGCTCGTAC
CTGCTCGAGG GCGAGGTCGA ACTGCGCGGC GGCGCCGAGC TGCACGTGAG CGACGGCGGG
CTCGAGCGCA TCGCCTACGC GCGCTTCGTG CGCAAGGGCC TGGCCGAGGT GCACAGCGTG
CACGGACCGC AGGCCGGGCT GCGCAGCCGC TCGGGCGTGT TCGCGGGCGA CGCCTGCATG
GGCCCCTACC TGGGCTACGC CTGGGAGACC GAGTATCTCG ATATCAGCCC GCGCCTCGGT
CTGTGCCGGG CGCTGGGCGA GCGCGCGGCG CAGTTTGACG AGGACGCCTC GGTGCGTGCC
GGCGAGTTCG ACGCGGGCGT GCGCCTGGCC CATACCTGGG ATTTCGGACG CGCGGCCCTC
AGCGTCGGGG TGACGCCCGG CCTGGCGCTG ATCTCGGACG CCGCCGAGGT CGAAGGCGGT
TTCTTCAGCC GCTACCGCAC CGCGGCCGTG CTGGGCACCT CGGTGGGGAT TGCCACCGAG
CTATCGGGAC CCTTCTACGC CGGCGCCGAA ATCGGCGCCC ACACCTATGT ACAGCGCAAG
CGCACGCTGA TCTACGAGAG CGGGGTGCTG TTCCCGGTAG TCGTTGGCGC TCGCGACGAG
TTCGACGCCG ACCTGGTGCT CGGGCTCAGC GCCGGCATCG GCATGCGCTG GTGA
|
|---|
| Protein sequence | MNANDQPNAC TRSPQRHALQ RHALLVAIVG AALLWPAQAL AQVQRFAVII GNNLGGPEDV
TLRYAEDDAT KVYEVLEHLG GFRPEDMLLL RGRSADEVRD ALISLNERIR RRSSRGRGDA
MLLVYYSGHA DARALHLGDD ELSLRQVEQL VTGSAAAFRV LVLDACRSGA LTRVKGGRRG
PPVAITLEDE LAGEGTVFLT ASAADEDAQE SDAIRGSFFT HYLVSGLIGA ADQNRDGRVV
LEEAYRYAYE HTLRASSRTL AGTQHPTFRY DMRGQGLVVL TEVVPQRQRA LVHLPAGRSY
LLLRNGADGP VAAEVGARDK VRRISLAAGR YFVRARARSY LLEGEVELRG GAELHVSDGG
LERIAYARFV RKGLAEVHSV HGPQAGLRSR SGVFAGDACM GPYLGYAWET EYLDISPRLG
LCRALGERAA QFDEDASVRA GEFDAGVRLA HTWDFGRAAL SVGVTPGLAL ISDAAEVEGG
FFSRYRTAAV LGTSVGIATE LSGPFYAGAE IGAHTYVQRK RTLIYESGVL FPVVVGARDE
FDADLVLGLS AGIGMRW
|
|---|
| |