| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_2842 |
|---|
| Symbol | |
|---|
| ID | 8545230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 3895016 |
|---|
| End bp | 3896779 |
|---|
| Gene Length | 1764 bp |
|---|
| Protein Length | 587 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 646387531 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_003267259 |
|---|
| Protein GI | 262196050 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.609412 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCACT CCAACTTTCT GTTCTTCCTC CTTCTGCTTG CCGGGTTCTT CGTGTCGACC
TCTTCTTGCA AGGAGGGCGA TGCCGGAACG TCTTCGGCCC CAACAAGCGC TCCCCACGAG
CAGGCCCATG ACCCAACGGG AGAGGGCGAG GCGAGCTCTC CTCGGGTAGC GACCTCGAGC
GATTGGTGTG GCGGTCACGG CGTACCCGAG TCCATGTGCA CGGTGTGCAA CCCGGCCCTC
GCGGACCATT TCCAGCGCGA GGGCGACTGG TGTCAGGAGC ATGGGTTTCC GGAGTCTGTG
TGTCCGGTCT GCAATCCGAT GGAGCCCCCG GCCGAAGCCG GCAGCCCATC GCGGGGGAAT
GCAGCTGACT GGTGTGGCGG CCACGGCGTC CCTGAGTCCA TGTGCACCGT GTGCAACCCG
AGCCTTGTGG ACCGCTTCCA GCGTGAGGGC GACTGGTGCC AGGAGCACGG GTTTCCGGAG
TCTGTGTGTC CGGAGTGCAA TCCGATGCAA CCACCGGCGG ACAGCGGCGA GCCAGCGCAA
GCCAGCGCAT CGGATTGGTG CAGCGAGCAC GGCGTCCCTG AGTCCATGTG TACGCAATGC
AACCCGGGCC TCGCTGCAGG GTACCGCGAA TCTGGCGACT GGTGCGGGGA GCACGAGTTT
CCTGAGTCTG TGTGTCCGGT CTGCAATCCG GTGACGCCAC CTGCGGGCGC ATCAGGCCCT
CAGACTCGGG TTCAGCTCTC GGAGACTGCC TTTCAAACGA GCGGTATTCG TCTCGAACGC
GTCTCCTCGC ATCGAGTGTC ATCAGGCGGC GTTCGTGTTC CGGCGGAGAT CCAGTTCGAT
CCCGACCGGC TTGCCCATGT CAGCCCGCTC GTCGACGGAC AGATGGTGAG CGTCGCCGTG
ACGATCGGTG ACCGAGTTGA GGCGGGAGAC GAGCTGGCGA CCTTTCGCAG CGTCGAGCTG
GGGCAGGCCC GGGCTGAGCT GTCGCGGGCA ACCGCGGTTC GAGAGACGGC CCAGGCCAAC
CTCGAACGCC AGCAGCGACT GCGGGACGAG GGGATCAACT CCGAGCGGAG CCTCCTCGAG
GCACGGCAAG CGTTCGATGA AGCCGACGCC GCTCGTGACG CGGCACGGTC CCGCCTCCGT
GTGTTTGGCG TGCGCGGCGG ATCGGGCTCG GACATGACCC TGACCAGTCC CATCGATGGC
GTGGTGGTGG AGCGACACGC AACGCGAGGC GAGAACGTGT CGACCGAGGA CACCCTCTTC
GTGGTCGCCG ATGCGTCGGA GGTGTGGGTG ATCGCGCGGG CCTACGAGCA GCACATCCCG
CTCGTCCGGG TCGGAATGAG CGCGACGCTC ACCGTGGGAC CCCACGAGGG AAGGCAGTGG
ACCGGCACCG TCAGCTACGT CTCGCTATCG CTCGACGAGA CGACGCGCAC GCTGCCGGTG
CGCATGTCGG TGTCGAACGA CGACGGCGCG CTGCGACCTG GCATGTTCGG AACGCTCACG
ATTGACGGTG GGAACGCAGG ATCAATGCTC AGCGTCCCGG TCTCTGCGGT CCAGTCGTTG
AACAGTCGAG ATGTCGTGTT CGTGCAGGGG GACGCGGTGC GGACGTTCGA GGCTCGCACG
GTCGTGTTGG GTCGCGAGGC GGAGGGGATG TCCCCGGTCC TCGAGGGCCT CTCGGGTACC
GAAACGGTGG TCGTGGCGGG CGCCTTCATT CTCAAGTCGG AGCTCGTGCG CGGCCAGCTC
GCCGACGGCT GCGCGGGGGA CTGA
|
|---|
| Protein sequence | MKHSNFLFFL LLLAGFFVST SSCKEGDAGT SSAPTSAPHE QAHDPTGEGE ASSPRVATSS
DWCGGHGVPE SMCTVCNPAL ADHFQREGDW CQEHGFPESV CPVCNPMEPP AEAGSPSRGN
AADWCGGHGV PESMCTVCNP SLVDRFQREG DWCQEHGFPE SVCPECNPMQ PPADSGEPAQ
ASASDWCSEH GVPESMCTQC NPGLAAGYRE SGDWCGEHEF PESVCPVCNP VTPPAGASGP
QTRVQLSETA FQTSGIRLER VSSHRVSSGG VRVPAEIQFD PDRLAHVSPL VDGQMVSVAV
TIGDRVEAGD ELATFRSVEL GQARAELSRA TAVRETAQAN LERQQRLRDE GINSERSLLE
ARQAFDEADA ARDAARSRLR VFGVRGGSGS DMTLTSPIDG VVVERHATRG ENVSTEDTLF
VVADASEVWV IARAYEQHIP LVRVGMSATL TVGPHEGRQW TGTVSYVSLS LDETTRTLPV
RMSVSNDDGA LRPGMFGTLT IDGGNAGSML SVPVSAVQSL NSRDVVFVQG DAVRTFEART
VVLGREAEGM SPVLEGLSGT ETVVVAGAFI LKSELVRGQL ADGCAGD
|
|---|
| |