| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_2410 |
|---|
| Symbol | |
|---|
| ID | 8544796 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 3333274 |
|---|
| End bp | 3334524 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 646387109 |
|---|
| Product | polyhydroxyalkanoate depolymerase, intracellular |
|---|
| Protein accession | YP_003266840 |
|---|
| Protein GI | 262195631 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG4553] Poly-beta-hydroxyalkanoate depolymerase |
|---|
| TIGRFAM ID | [TIGR01849] polyhydroxyalkanoate depolymerase, intracellular |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.864459 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.428989 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTATC ATCTTTACGA GTGGAACCAC GCGGCCATGG CCCCCCTCCG CGCGGTGACC
CATACCACCC AGGTCCTTCT CGACAACCCC TACAATCTGC TGGCTCGCAC CCCGCTCGGG
CGCATGACCA AAGCGGCTTG CGAGGTCTTC GAGCGCGCCA CCCGGCGCTA CGGCAAACCC
GCTTTCGGCC TCCATGAGAC CGTGCGCGAC GGCCACCGCG GCTCGGTGTC CGAGGACGTC
GTCAAGTCCA TGCCCTTCTG CGACCTGATT CACTTCCGGC GCGCGTGGCA CATGGAGGGC
GCGGCCAACA GCGGTCGCGG GGCCCAGGAC GATCCCAAGG TCCTCATCGT CGCGCCCATG
TCCGGGCACT ACGCCACCCT GCTGCGCGGC ACCGTCGCCG CCATGCTGCC CGAGCACGAC
GTGTACATCA CCGACTGGCG CGACGCCCGC GTGGTGCCCG CCAACCAGGG CGCGTTCGGC
CTCGAGGACT ACATCGAGTA CGTGATGAAG TGCCTGCAGC ATATCGGCCC CGGCGCCCAT
GTGCTGGCCG TGTGCCAGCC GGGCCCGGCC GTGCTCGCGG CGACCGCGAT CCTGGCCGCG
CGCGGCGACG AAGCCCAGCC CGCCAGCATG GTGCTCATGG GCAGCCCCAT CGACCCGCGG
CGCAGCCCGA CCGTGCCCAA CAACCTCGCC ACCACGCGGC CGCTGCGCTG GTTCGAGCGC
AACGTCATCA CCCGCGTGCC GCCGCCCCAC CCCGGCTTCA TGCGCCGCGT CTACCCCGGC
TTTCTGCAGC TCACCGGGTT CATGACCATG AACCTCGACC GCCACTTCGA CGCCCAGGTC
AAGCTGTTCA ACAACCTGGT CGAGGGCGAC GGCGAGTCCG CCGAGGCGCA CCGCCGCTTC
TACGACGAGT ACCTCTCGGT CATGGACCTC ACCGCCGAGT TCTACCTCGA GACCATCCGC
GTGATCTTCC AGGAGCACGC GCTGCCGCGC GGCGAGATGA AATTCCGCGA CGAGCTCGTC
GATCCCAGCG CCATCGAGAA AACCGCCCTG ATGACGGTAG AGGGCGAAAA GGACGACATC
TCGGGCATCG GTCAGACCCA GGCCGCGCAC GATCTGTGCA CCGGCATCCC CGACAGCAAG
CAGCTCGACT ACATCCAGCC CGGCGTCGGT CACTACGGCG TGTTCAACGG CTCGCGCTGG
CGCAACGAGA TCCAGCCGCG GGTGCGCGAC TTCATCCGCG CCAACCGCTG A
|
|---|
| Protein sequence | MLYHLYEWNH AAMAPLRAVT HTTQVLLDNP YNLLARTPLG RMTKAACEVF ERATRRYGKP
AFGLHETVRD GHRGSVSEDV VKSMPFCDLI HFRRAWHMEG AANSGRGAQD DPKVLIVAPM
SGHYATLLRG TVAAMLPEHD VYITDWRDAR VVPANQGAFG LEDYIEYVMK CLQHIGPGAH
VLAVCQPGPA VLAATAILAA RGDEAQPASM VLMGSPIDPR RSPTVPNNLA TTRPLRWFER
NVITRVPPPH PGFMRRVYPG FLQLTGFMTM NLDRHFDAQV KLFNNLVEGD GESAEAHRRF
YDEYLSVMDL TAEFYLETIR VIFQEHALPR GEMKFRDELV DPSAIEKTAL MTVEGEKDDI
SGIGQTQAAH DLCTGIPDSK QLDYIQPGVG HYGVFNGSRW RNEIQPRVRD FIRANR
|
|---|
| |