Gene Hoch_2279 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_2279 
Symbol 
ID8544665 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp3174819 
End bp3176261 
Gene Length1443 bp 
Protein Length480 aa 
Translation table11 
GC content68% 
IMG OID646386984 
Productintegral membrane sensor signal transduction histidine kinase 
Protein accessionYP_003266715 
Protein GI262195506 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.609386 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATCA CCACCAAACT CATCGCGGTC GCGACCATCG CCCTCGCCGC CGCTCATCTG 
CTCTCCGGGG CGCTCTGCAC CTCTTCTTCG GAACGCCTGA GCGCGGCCGA GCGGGCGGCG
ATGGCCGACG CCGCCGCGAC GCTCGCACGC GCCGTCGACG TGGTCTGGGA AGAGGGCGGC
GCCGCCGCCG CGCTCGAGAT GGTCGAGAGA CTCGACGACC CCGAAGGCGG CTACGACCTG
GCTCTGTACG ATGCGGATGC GCGCGCGACC ATGTCGGTCG AGGCCTTTGC GGCGCTGGCC
GAGGCCGAGG CCGAGGCCGC TATCCTCGAG CCGGAAGGCG AGCAGGGCGC GCTGGCGCTG
CGCCTCGGTG TCGGACCCGG CGACTCGGTG CGCAAGGTCC TGGCCGTGCG CCGCGCGACG
CTCAGCCCGG GCGGCTGGAT GAGCGGTGAC GCCGGCCGTT TCGGGCTCTT GCTGGCGCTT
TGCAACCTGG CCCTGCTGGG CGCTGGGCTG CGCTGGATCG ACGGTCCGCT GCGCAGCCTG
GGCGCGCAGC TCAGCGCCAG CGCTCGCGAC GGTGGGCGAG CGCGCATCAG CGTCCGCGGC
GGCGACGAGA TCGGCCGACT GGCCGAACGA GCCAATGAGT TCCTCGACGG ACTGCGCCAG
TCGTGGACCG ATATGCGCGG CGAGTGGCAG ATGCGCACCT TGCTGTTCGA GCGGCTGCGC
CGCGCCGATC GCCTGAGCAC CATGGCCCGC CTGGCCTCGG TGATCGCCCA CGACCTGGGC
ACGCCGCTCA ACGTGGTTTC GGGCCGCGCC ATGATGATCT CGTCCACCCC GGACTGCGCC
CCCGAGATCG TCTCGGACGC GCGCATCATC GGCGAGCAGG CCAACAACAT GACCCGCCTG
ATCCGCAAGA CCCTCGACTA CGCGCGGCGC GGTGAGCTGC ACCCGGCCGA TGAGGACATG
GGCGAGCTGA TCGAGAGCGC GATCTCGCTG GTGACGCCGA TCGCCGAGCA CAGCCAGGTG
AGCATCGAAT TCCTGGAAGC GCCCGCGATC ATGGCCAAGG TGGACGAGCA GAAGGTTCTG
CAGATTTTGA CAAATGTGAT GATCAACGGC GTCCAGGCGC TCCCCGAAGG CGGTCGCATG
CGCGTGCGCC TCGACCGCGA GCTGGTGGAG GAGCCACCCG ACGCGCGGGC AGCCGCCGGC
CAGTACGTCC GTATCACCAT CGAGGACGAG GGCGTGGGCA TGGCGCCCGA ATTGCGCGAA
AACGTATTCG AACCGTTTTT TCAAGCATCT GGCGGGACTC CTAGCAGTGG CCTTGGACTG
GCCGTCTGCT ATGCCGTAGT TCGCGAGCAC GGTGGATGGA TAACCGTCCA CAGTGAGCTT
GGCGAAGGCA GCCGATTTGA TGTCTACTTG CCGAACAGCA ATGACGAGGG AGAAGATGCA
TGA
 
Protein sequence
MKITTKLIAV ATIALAAAHL LSGALCTSSS ERLSAAERAA MADAAATLAR AVDVVWEEGG 
AAAALEMVER LDDPEGGYDL ALYDADARAT MSVEAFAALA EAEAEAAILE PEGEQGALAL
RLGVGPGDSV RKVLAVRRAT LSPGGWMSGD AGRFGLLLAL CNLALLGAGL RWIDGPLRSL
GAQLSASARD GGRARISVRG GDEIGRLAER ANEFLDGLRQ SWTDMRGEWQ MRTLLFERLR
RADRLSTMAR LASVIAHDLG TPLNVVSGRA MMISSTPDCA PEIVSDARII GEQANNMTRL
IRKTLDYARR GELHPADEDM GELIESAISL VTPIAEHSQV SIEFLEAPAI MAKVDEQKVL
QILTNVMING VQALPEGGRM RVRLDRELVE EPPDARAAAG QYVRITIEDE GVGMAPELRE
NVFEPFFQAS GGTPSSGLGL AVCYAVVREH GGWITVHSEL GEGSRFDVYL PNSNDEGEDA