| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_2105 |
|---|
| Symbol | |
|---|
| ID | 8544491 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 2920566 |
|---|
| End bp | 2923376 |
|---|
| Gene Length | 2811 bp |
|---|
| Protein Length | 936 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 646386812 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003266543 |
|---|
| Protein GI | 262195334 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.252603 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.400076 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATATCC CTCCCTCGAT GGCGCGCTGC GGCGGAGCGC AGCTAGCTCG AGAGCGGGCG
CAGCCGCGGC GCCGCCTGCG CGCATCGGAC TCGGGGCGCT GCTACCGCAC CGCGGCATCG
CTGACCAGCT TCGCGCTCGC GGCCCTGGTC GCCGGCCCGG CGCTGGCCCG TCCGGCCGAA
GACGCCGAGA CCGCGGGCGA GCCCTGGCGC CCGGACGAAA CCGCCGAGAC GGCCGCAGCC
GCGAGCGAAC GCGAGACGCG CGAGCATGTC GCCCAGCGAC GCGGCGCGGC CATCGAGATC
GACGGTCGCA TCGACAGCGC CGAGTGGGAC GGCATCCCGG CGCAGAGCGA TTTTCGCCAG
CGGCGGCCGG TGCAGGGGGC TGCGCCGAGC TTCGCCACCG CGTTCCGCAT CGCCTACGAC
GACGAGGCGC TGTACATCGC GGTGCAGGCC TTCGATCCCG AGCCCGACGC GATCCGCGGG
CAGCTCACGC GCCGCGACCA GGACTCGCCC TCGGACTGGC TGTCGGTGGC CGTCGACTCG
TACGCCGACC GCCGCACGGC CTTTCAGTTC AGCATCAACC CGGCCGGCGT GCAGCGCGAT
CTGCTGCTCT ACGACGACAC CGCCAGCGAC GCCTCCTGGG ACGCGGTGTG GTCAGCGGCC
GCGACCCGCA ACCGCGACGG CTGGGCGGCC GAGTTCCGCA TCCCGCTGTC GCAGCTCCGC
TTCAGCGCCC AGGCTGCCGA CGACGGCGAG GACGACGACG ACGACGCCGA TGCCTGGGGC
CTGCAGGTGA CGCGGCTGGT GGCGCGCACT CAAGAGGAGA GCACCTGGGC GCCGTGGCCG
CAGGAGAACG GCCAGCGCGT GAGCCTGTTT GGCCGCCTGC GCGGCACCGG CGAGCTCGAG
CCGCCGCGCC GCCTGGAGCT GGTGCCCTAC CTGCTCGGCG GCCTGCAGAT CGGCGGCGCG
GGCGGCGACA CCGAGGGCGC GTTCGGCGCC GGGCTCAGCG GCACCTACGG GCTGAGCGGC
AGCCTCACGC TGTCGGGCGC GATCAACCCG GATTTCGGAC AGGTGGAAGC CGACCCCTCC
GAGGTCAATC TCAGCGCCGA TGAGTCGTAC CTCAGCGAGA AGCGGCGCTT CTTCCTCGAG
GGCGCCGACA CCTTCCGCGT GCCCCTCGAC GGCGCGGACA CGCTGTTCTA CTCGCGCCGC
ATCGGCGCGC CCCCGCACAA CCCGGCCGGC CTCGTCGGCG CGCCCGCGCG CTCGACCATC
TACGGCGCGG CCAAGCTCAG CGGCAAGACT TCGGACGGCT GGACGATAGG CGCCCTCGAC
GCGGTGACCG CGGCCGAGCA CGCCGGCGCT CGCGCGGTCG AGCCGCTGAC CAACTACGGC
ATGCTGCGCC TGGTCCGCGA CTTCCGCGGC GGCCGCTCGA CCGTGGGCGG CGCGCTCACT
AGCGTGCACC GCGCCCACGG CGGCGACGCG CCCGGGGCAG ACGAGCTGCG CGCGGCCCTG
CCCAGCCAGG CCTACGCGGC CGCGCTCACC GGCAGCCACC GCTTTGCCGA CGACGCCTGG
TCGCTCGACG GCTCGCTGGC GCTGAGCCAC GTGCGCGGCA GCGAGGAGGC CATCGCGTCG
CTGCAGCAGG CCAGCCAGCG CTACTATCAG CGCCCCGACG CCGAACACCT CAGCTTCGAG
CGCGACCGCC GCAGCCTCAG CGGCGCGTCG CTGTCGTGGG CCGTGCAGAA GCGCGCAGGC
GACACCTGGC GCGGCGGCGT GGGCGCGCGC ACGCGCTCGC CCGGCTTCGA GATCAACGAC
CTCGGCTTTC AGCCGGAGGC CGATTACGCC CTGCCCTGGC TGTGGCTGCA GCGCCGCGAC
GATCGCCCCG GCCGCTTCAC CCAGAGCTGG GCGACCAACT TCAATCTCTG GGGCCGCTGG
AACTACGGCC GCGAGCTGCT CGCGCTCGGC GGCAACCTCA ACGCCTCGGC CACGCTGACG
AACTACGCCA GCGTCTACGG CGGCGCCGGC GTCGACGAGG TCCGCCGCGA TCCCCGACAT
CTGCGCGGCG GCCCCACGGT GCACGGCGCG CGCAGTCTTT TCGGCTGGGC CGGCGCCGGC
AGCGACCCGC GCCGAGCGCT GCGGCTCGAG CTCTACGGCG ACGCCCGGGC GCAGCCCGAG
ACCGCGTCGC GGCGCGCGTA CGTATCGCTG CACGCCACGC TGCGCGCCAT GAGCAACCTC
GAGCTCGGGC TCGGCTCCTC GCTCACGCGG CGGCGGCAAA ACGACCAGTA CGTGACCACG
GCCAGCGACG AGCAAAGCGG CGAAGCGCGC TACCTGCTCG GCGAGCTCGA GCAGACCACG
GCCGCGCTCA CGCTGCGCGC CAGCTACAAC TTCACCACCC GCCTGGGCTT GCAGTTCTAC
GCCCAGCCCT TCGTGAGCGC CGGCGATTAC CGGGCCTACA AAGAGGTGGT GGCGCCGGGT
GCGGCCACCT ACGCGGCCCG CTATCGCGAC CTGCGCGGGG TCCGCAGCGA GGACGTGGCC
ACCGAGGACG GCACCGAGCG CCGGGTCGAC GCCGATGGCG ACCAGGTGGT CGATTACCGC
TTCGCCCTGG CCGATTTCGA TATCCGCGAG CTCAACACCA ACCTGGTATT TCGCTGGGAG
TATCTGCCGG GCTCGGCGCT GTTCTTCATC TGGAGCCACA ACCGCGACAG CGCCGCCTCC
GGTCACGAGG AGGACGGCCG CTTCCAGCCC CAGCGCGACG CCGAAGCGCT GGTGGCCGAA
CGCGGCGAGC ACGTGCTGCT GCTCAAGCTC TCGCACTGGT TCGCCGCGTA G
|
|---|
| Protein sequence | MDIPPSMARC GGAQLARERA QPRRRLRASD SGRCYRTAAS LTSFALAALV AGPALARPAE
DAETAGEPWR PDETAETAAA ASERETREHV AQRRGAAIEI DGRIDSAEWD GIPAQSDFRQ
RRPVQGAAPS FATAFRIAYD DEALYIAVQA FDPEPDAIRG QLTRRDQDSP SDWLSVAVDS
YADRRTAFQF SINPAGVQRD LLLYDDTASD ASWDAVWSAA ATRNRDGWAA EFRIPLSQLR
FSAQAADDGE DDDDDADAWG LQVTRLVART QEESTWAPWP QENGQRVSLF GRLRGTGELE
PPRRLELVPY LLGGLQIGGA GGDTEGAFGA GLSGTYGLSG SLTLSGAINP DFGQVEADPS
EVNLSADESY LSEKRRFFLE GADTFRVPLD GADTLFYSRR IGAPPHNPAG LVGAPARSTI
YGAAKLSGKT SDGWTIGALD AVTAAEHAGA RAVEPLTNYG MLRLVRDFRG GRSTVGGALT
SVHRAHGGDA PGADELRAAL PSQAYAAALT GSHRFADDAW SLDGSLALSH VRGSEEAIAS
LQQASQRYYQ RPDAEHLSFE RDRRSLSGAS LSWAVQKRAG DTWRGGVGAR TRSPGFEIND
LGFQPEADYA LPWLWLQRRD DRPGRFTQSW ATNFNLWGRW NYGRELLALG GNLNASATLT
NYASVYGGAG VDEVRRDPRH LRGGPTVHGA RSLFGWAGAG SDPRRALRLE LYGDARAQPE
TASRRAYVSL HATLRAMSNL ELGLGSSLTR RRQNDQYVTT ASDEQSGEAR YLLGELEQTT
AALTLRASYN FTTRLGLQFY AQPFVSAGDY RAYKEVVAPG AATYAARYRD LRGVRSEDVA
TEDGTERRVD ADGDQVVDYR FALADFDIRE LNTNLVFRWE YLPGSALFFI WSHNRDSAAS
GHEEDGRFQP QRDAEALVAE RGEHVLLLKL SHWFAA
|
|---|
| |