Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hoch_2076 |
Symbol | |
ID | 8544458 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haliangium ochraceum DSM 14365 |
Kingdom | Bacteria |
Replicon accession | NC_013440 |
Strand | + |
Start bp | 2869080 |
End bp | 2875403 |
Gene Length | 6324 bp |
Protein Length | 2107 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 646386779 |
Product | GAF sensor hybrid histidine kinase |
Protein accession | YP_003266514 |
Protein GI | 262195305 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTACCT CGCGAGTGAA GTCCAACCCC GAGGAACTCA CGAAGAAGCA GATCTTGTCA GCGCTGCGCG CCTTCAAGCG CGGCGAGTTC TCGACCCGCC TGCCCGACGA TCTCATCGGC ATCGACGGCC AGATCTGCGA GACCTTCAAC GACATCCTCA CGCTCGCCGA GACGCTGAGC ACCGAGGTCG GCGTGCTGCG CGGCGACGTC GGCAGCGACG GTCACGTGCG CCGGCGCCTG CGCCGCAACG GCGCGCGCGG CGGCTGGGCC GTGTACGTCA CCTCGGTCAA CGAGCTGATC GACGACTTGA CCAACCACCT GTCCGAAATC GCCGCCGTGG TCGCGGCCGT GGCCCGCGGC GACCTCACGC AGCGCATCGA GATCGAGGGC AGCGACGAGC CGCTGCAGGG CGCGTTCTTG CGCTACGCGC GCACGGTCAA CGACATGGTC GACCGCCTGG CCGCGTTCAG CTCGGAGGTC ACGCGGGTGG CGCTCGACGT CGGCGTCGAG GGCAAGCTCG GCGCCCAGGC GCGCATCAAA GGCGTCGAGG GCACGTGGAA GGAGCTGACC GACAGCGTCA ACTCGATGGC CAGCAACCTC ACCTCGCAGG TGCGCGAGAT CGCGCGCGTG ACCACGGCGG TGGCCCAGGG CGACCTGACC AAGACCATCA ACATCGAGGT CCGCGGCGAG CTGCTGGCGC TCAAGAACAC CATCAACACC ATGGTCGACC AGCTCGGCTC GTTCGCCGAC GAGGTCACGC GCGTGGCCCG CGAGGTCGGC ACCGAGGGCA TGCTCGGCGG CCAGGCGCAG GTGCGCGGGG TCTCGGGCGT GTGGCGCGAG CTGACCGAGA ACGTCAACTC GATGGCCAAC AACCTCACCT TGCAGGTGCG CAACATCGCC GAGGTGGCCA CCGCGATCGC GCGCGGCGAC CTCAGCCGCA AGATCACGGT CGAGGTCGCC GGCGAGCTGC TCGAGCTCAA GCAGACCATC AACACCATGG TCGATCAGCT CGGCTCGTTC GCGGCCGAGG TGACGCGTAT GGCGCGCGAG GTCGGCACCG AGGGCGTGCT CGGCGGCCAG GCCGAGGTCG GCGAGATCTC GGGCGTGTGG CGCGAGCTGA CCGAGAACGT CAACTCGATG GCCAACAACC TCACCCAGCA GGTGCGCAAC ATCGCCGAGG TGACCACGGC CATCGCCGAG GGCGATCTCA GCCGCAAGAT CACGGTCGAC GCGCGCGGCG AGATCCTGGC GCTCAAGAAC ACGGTCAACA CCACGGTCGA CAAGCTCAAC AGCTTCTCGG CCGAGGTCAC GCGCGTCGCC CGCCTGGTCG GCACCGAGGG CACGCTGGGC GTGCAGGCCG AGGTCAAAGG CGTCTCGGGC ATCTGGAAGG AGCTGACCGA CAACGTCAAC CTGATGGGCA GAAACCTCAC CGACCAGGTG CGCGACATCG CCAACGTCAC CACCGCGGTG GCCAACGGCG ATCTCAGCAA GAAGATCACG GTCGAGGTCA AAGGCGAGAT CCTGGCGCTC AAGAACACCA TCAACAACAT GGTGGACTCG CTGGGTTCGT TCGCCGACGA GGTCACGCGC CTGGCGCGCG AGGTCGGCAC CGAGGGCGTG CTCGGCGGCC AGGCGACCGT GGTCGGGGTG TCCGGTATCT GGAAGGAGCT GACCGACAAC GTCAACTCCA TGACCAACGA CCTCACCAAC CAGGTGCGCA GTATCGCCGA GGTGGCCGCG GCCGTGGCCT CGGGCGAGCT GAGCAAGAAG ATCGCGGTCG ACGCGCGCGG CGAGATGCTC GATCTCAAGA ACTCGATCAA CACCATGGTC GATCAGCTCA GCCTGTTCGC CGACGAGGTC ACGCGCATGT CGCGCGAGGT CGGCGTCGAG GGCAAGCTGG GCGGGCAGGC CGAGGTCGAG GGCGCGCGCG GCATCTGGAA GGAGCTGACC GACAACGTCA ACCTGATGGG CCGCAACCTC ACCAACCAGG TGCGCGACAT CGCCGAGGTG ACCACGGCCG TGGCCCGCGG CGACCTCACG CGCAAGATCG CGGTCGACGC GCGCGGCGAG ATCCTCGAGC TGAAGAACAC GATCAACACC ATGGTCGATC AGCTCGGCTC GTTCGCCGAC GAGGTCACGC GGCTGGCCAG CGAGGTCGGC GTCGAGGGCC GCCTGGGCGG TCAGGCCGAC GTGCGCGGGG TCTCCGGGAC GTGGCGGCAT CTCACCGACG CGGTCAACTC GATGGCCCGC AACCTCACCG ACCAGGTGCG CAACATCGCC CAGGTGGCCA CGGCCATCGC CCAGGGCGAC CTGCAGAAGA AGATCGTGGT CGACGCGCGC GGCGAGATCC TCGAGCTGAA GAACACGATC AACACCATGG TCGGCCAGCT CAGCTCGTTC GCCGAGCAGG TGACGCGCGT GGCCCGCGAG GTCGGCACCG AGGGCAAGCT GGGCGGCCAG GCCTCGGTCG AGGGCGTCTC GGGCATCTGG AAGGAGCTGA CGGACAACGT CAACCTGATG GCCTCGAACC TCACCAACCA GATGCGCGAC ATCTCGCAGG TGGCGACCGC CATCGCCCAG GGCGATCTCG GACAGAAGGT CACGGTCGAG ACCCGCGGCG AGCTGCTCGA GCTGAAGAAC ACGATCAACA CCATGGTCGA TCAGCTGGGC TCGTTCGCCG ACGAGGTGAC GCGCGTGGCC CGCGAGGTCG GCGTCGAGGG CCGCCTCGGC GGCCAGGCCG ACGTGCGCGG GGTCTCGGGC ATCTGGAAGG AGCTGACCGA TAACGTCAAC CTGATGGGCC GCAACCTCAC CGACCAGGTG CGCGACATCG CCGATGTGAC CACGGCGGTG GCCAACGGCG ACCTGAGCAA GAAGATCACG GTGGCGGTCA AGGGCGAGAT CCTGGCGCTG AAGAACACCA TCAACAGCAT GGTGGACTCG CTGGGCTCGT TCGCCGACGA GGTGACGCGC CTGGCGCGCG AGGTCGGCAC CGAGGGCACG CTGGGCGGCC AAGCCGAGGT GCGCGGGGTC TCGGGCATCT GGAAGGAGCT GACCGACAAC GTCAACCTGA TGGCCAGAAA CCTCACCGAG CAGGTGCGCG GCATCGCGCG CGTGGTCACT GCGGTGGCCA ACGGCGATCT CAAGCAGCAG CTCATGCTCG AGGCGCGCGG CGAGATCGCC ACCCTGGTCG ACACCATCAA CGACATGATC GTCACGCTCT CGCGTTTTGC CGACCAGGTG TCCGGCGTCG CCCGCGACGT GGGCGTCGAG GGCCGGCTGG GCGGTCAGGC GGTGGTGCCG GGCGCGGCCG GTATCTGGCG CGACCTCACC AACAACGTCA ACGAGCTGGC CGGCAACCTC ACCCGCCAGG TGCGCGCCAT CGGCGACGTG GCCACGGCCG TGACCAAGGG CGAGCTCACC CAGAGCATCG ACGTCGAGGC CCGCGGCGAG GTCGCGATCC TCAAGGACAA CCTCAACCAG ATGATCCAGA CCCTGGCCCA GACCACGCGG GTCAACCAGG AGCAGGACTG GCTCAAGACC AACCTCACGC GCTTCACGCG CATGCTCCAG GGCCAGCGCG ATCTGCTCAC GGTTGCCCGC CAGGTGCTCT CGGAGCTGGC GCCCGTGGTC GACGCCCAGC ACGGCGGCTT CTACATGGTG TCGCCGGGCG ACGACGAGCC CACGCTGCGC CTGTTCGCCT CGTACGCGTA CATGGAGCGC AAGCACGTGG CCAATCAGTT CGGCTTTGGC GAGGGCCTGG TCGGCCAGGC CGCGCTCGAG CGCAAGCGCA TCCTGGTGAC CTCGCTGCCC GACGACTACG TGCAGATCAC CTCGGGCCTG GGCGAGGCCC GGCCGCGCGC GGTGGTGGTC GTGCCCGTGG TCTTCGAGGA GGAGGTCAAG GGCGTCATCG AGCTGGGCTC GTTCCAGATC TTCTCCTCGA TTCAGCTCGC CTTCCTCGAC GAGCTGATCG AGAGCCTCGG CATCGTGGTG GCGACCATCG AGGCCACCAT GCGCACCGAT GAGCTGCTGC GGCAGTCGCG CAACCTGGCC GAGGAGCTGA CCACGCAGCA GGAGGAGCTG CAGCAGACCA ACGAGGAGCT GGAGGAGAAA GCCCGCCAGC TCACCGAGCA GAAGTCCGAG GTCGAGCGCA AAAACCAGCA GGTCGAGCTG GCCCGCCAGG AGCTGGAGGA GAAGGCCGAG CAGCTCGCGC TCACCTCGCG CTACAAGTCC GAGTTTTTGG CCAACATGAG CCACGAGCTG CGCACGCCGC TCAACAGCTT GCTGATCTTG TCGCGCCAGC TCGCGACCAA CCGCGACAAC AATCTTTCGG ACAAGCAGGT GGAATACGCC AGCACGATCC ATCAGTCGGG CGCCGACCTG CTGTCGCTGA TCAACGAGAT CCTCGACCTG GCCAAGATCG AGTCGGGGAC CATGGCGGTC GAGGTGAGCT CGGTGTCGTT CTCGCAGCTC TCCGACTACG TCGAGCGCCT GTTCCGCCAG GTCGCCGACG AGAGCGGCGT GGTCTATCAG ATCGAATGCG CCGACGAGCT GCCGGCGGCC ATCGAGACCG ACGAGCAGCG GCTGCGCCAG GTGCTGCGCA ATCTGCTGTC GAACGCCTTC AAGTTCACCA AGAAGGGCGA GGTGATGCTG CGGATGTCGA CCGTCAAGCC CGAGGCCGAC GGCGACTACG GCGACGAGCC CTTCCTGGTC GCGTTCTCGG TGAGCGACAC CGGCATCGGT ATTCCCAAGG ACAAGCAGCG CATCATCTTC GAGGCCTTTC AGCAGGCCGA TGGCGGCACC AGCCGGCGCT TTGGCGGCAC CGGCCTGGGC CTGTCGATCA GCCGCGAGAT CGCCGAGCTG CTCGGCGGCG AGCTGGATGT CGAGAGCGAG CCCGGACGCG GCAGCACCTT CACGCTGTAC CTGCCGCCCT CCTACCGCGG GCCGGCGCGC GCGCGCGGGG CGTCCGAAAT CAAGCGCTCC GGGCCCAAGC CGCGGGTCGC CGAGCTGCCC GGCGCTGCGC TCAAGGCGCT GCTGCCGACG CGCGCGGCGA GCGAGGCCGG ACACGCGTCC GATGACGACG AGAGCGAGAT GCCGCAGCAC ATCTCGACGC GCTCGGTGGC CGACGATCGC AAGCACATCT CGGCGGGCGA CCGCGTGCTG CTTATCATTG AGGACGACGA TGTGTTCGCG CGTACGCTGC TCGACGCGGT GCGCGAACGC GGCTTCCGCG GCCTGGTGGC GCTCTCGGGC AACGAGGGCC TGGCCGTGGC CAAGAGCTAC AAGCCCGACG CCATCACGCT GGACCTGCGC CTGCCCGACA TGGACGGCTG GGTGGTGCTC GACCGGCTCA AGCACGACTC CGAGACCGGC CACATTCCGG TGCACATCAT CAGCGCTGCT GCGGACGAGC GCCGCGGCCT GGAGAACGGC GCGCTGGCCT TCCTCAACAA GCCGGTCGGC CCCGAGGCGC TGGACGTGGC GCTCTCGGAC ATCGAGTCGT TTTTGGACAG GCGGGTCAAG CGGGTGCTGA TCGTCGAGGA CGACGATGTC CAGCGCCGCG CCCTGGTCGA GCTGATCGAC GGTGAGGACG TGAGCACCGA GGCTGTGGGC AGCGCCGAGG CCGCGCTGCA GGCGCTCGAG TCGGGCACCT TCGACTGCAT GATCATCGAC CTCAAGCTGC CCGAGATGTC GGGCGACGAG CTGATCGAGA AGTTCAAGGA GCGGCCGGCG TTCCGGCGCA TGCCGGTGAT CGTGTACACC GGCAAGGAGC TGAGCGAGGG CGACGAGATC AGCCTGCGCC GCCTGGCCGA GACCATCATC GTCAAGGACG TGCGCTCGCC CGAGCGCCTG CTGGCCGAGA CCATGCTGTT TTTGCACCGG GTGGAGAGCG ATCTGCCCGA GTCCAAACAG CGCATGCTGC GCAACCGCTT CGCCGAGGGC GACCCGGCGC TGGCCGACAA GAAGATCCTC GTGGTCGACG ACGACGTGCG CAACATCTTC GCTATCACCA CGATCCTCGA GCAGCACCTG ATGGACGTGG TCTACGCCGA GAACGGCCGC GAGGCGCTCG ACCAGCTCGA CCGCAACCCG GACATCGACA TCGTGCTCAT GGACATCATG ATGCCCGAGA TGGACGGCTA CGAGGCCACG CGCCGCATCC GCAGCGATGG CCGCTACGGG CGCCTGCCGG TCATCGCGCT CACGGCCAAG GCGATGAAGG GCGATCGCGA TAAGTGCATC GAGGCCGGCG CGTCCGACTA CATCACCAAG CCGGTGGATC CCGACCAGCT CATCTCGCTG TTGCGGGTGT GGCTGTACCG CTAG
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Protein sequence | MATSRVKSNP EELTKKQILS ALRAFKRGEF STRLPDDLIG IDGQICETFN DILTLAETLS TEVGVLRGDV GSDGHVRRRL RRNGARGGWA VYVTSVNELI DDLTNHLSEI AAVVAAVARG DLTQRIEIEG SDEPLQGAFL RYARTVNDMV DRLAAFSSEV TRVALDVGVE GKLGAQARIK GVEGTWKELT DSVNSMASNL TSQVREIARV TTAVAQGDLT KTINIEVRGE LLALKNTINT MVDQLGSFAD EVTRVAREVG TEGMLGGQAQ VRGVSGVWRE LTENVNSMAN NLTLQVRNIA EVATAIARGD LSRKITVEVA GELLELKQTI NTMVDQLGSF AAEVTRMARE VGTEGVLGGQ AEVGEISGVW RELTENVNSM ANNLTQQVRN IAEVTTAIAE GDLSRKITVD ARGEILALKN TVNTTVDKLN SFSAEVTRVA RLVGTEGTLG VQAEVKGVSG IWKELTDNVN LMGRNLTDQV RDIANVTTAV ANGDLSKKIT VEVKGEILAL KNTINNMVDS LGSFADEVTR LAREVGTEGV LGGQATVVGV SGIWKELTDN VNSMTNDLTN QVRSIAEVAA AVASGELSKK IAVDARGEML DLKNSINTMV DQLSLFADEV TRMSREVGVE GKLGGQAEVE GARGIWKELT DNVNLMGRNL TNQVRDIAEV TTAVARGDLT RKIAVDARGE ILELKNTINT MVDQLGSFAD EVTRLASEVG VEGRLGGQAD VRGVSGTWRH LTDAVNSMAR NLTDQVRNIA QVATAIAQGD LQKKIVVDAR GEILELKNTI NTMVGQLSSF AEQVTRVARE VGTEGKLGGQ ASVEGVSGIW KELTDNVNLM ASNLTNQMRD ISQVATAIAQ GDLGQKVTVE TRGELLELKN TINTMVDQLG SFADEVTRVA REVGVEGRLG GQADVRGVSG IWKELTDNVN LMGRNLTDQV RDIADVTTAV ANGDLSKKIT VAVKGEILAL KNTINSMVDS LGSFADEVTR LAREVGTEGT LGGQAEVRGV SGIWKELTDN VNLMARNLTE QVRGIARVVT AVANGDLKQQ LMLEARGEIA TLVDTINDMI VTLSRFADQV SGVARDVGVE GRLGGQAVVP GAAGIWRDLT NNVNELAGNL TRQVRAIGDV ATAVTKGELT QSIDVEARGE VAILKDNLNQ MIQTLAQTTR VNQEQDWLKT NLTRFTRMLQ GQRDLLTVAR QVLSELAPVV DAQHGGFYMV SPGDDEPTLR LFASYAYMER KHVANQFGFG EGLVGQAALE RKRILVTSLP DDYVQITSGL GEARPRAVVV VPVVFEEEVK GVIELGSFQI FSSIQLAFLD ELIESLGIVV ATIEATMRTD ELLRQSRNLA EELTTQQEEL QQTNEELEEK ARQLTEQKSE VERKNQQVEL ARQELEEKAE QLALTSRYKS EFLANMSHEL RTPLNSLLIL SRQLATNRDN NLSDKQVEYA STIHQSGADL LSLINEILDL AKIESGTMAV EVSSVSFSQL SDYVERLFRQ VADESGVVYQ IECADELPAA IETDEQRLRQ VLRNLLSNAF KFTKKGEVML RMSTVKPEAD GDYGDEPFLV AFSVSDTGIG IPKDKQRIIF EAFQQADGGT SRRFGGTGLG LSISREIAEL LGGELDVESE PGRGSTFTLY LPPSYRGPAR ARGASEIKRS GPKPRVAELP GAALKALLPT RAASEAGHAS DDDESEMPQH ISTRSVADDR KHISAGDRVL LIIEDDDVFA RTLLDAVRER GFRGLVALSG NEGLAVAKSY KPDAITLDLR LPDMDGWVVL DRLKHDSETG HIPVHIISAA ADERRGLENG ALAFLNKPVG PEALDVALSD IESFLDRRVK RVLIVEDDDV QRRALVELID GEDVSTEAVG SAEAALQALE SGTFDCMIID LKLPEMSGDE LIEKFKERPA FRRMPVIVYT GKELSEGDEI SLRRLAETII VKDVRSPERL LAETMLFLHR VESDLPESKQ RMLRNRFAEG DPALADKKIL VVDDDVRNIF AITTILEQHL MDVVYAENGR EALDQLDRNP DIDIVLMDIM MPEMDGYEAT RRIRSDGRYG RLPVIALTAK AMKGDRDKCI EAGASDYITK PVDPDQLISL LRVWLYR
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