| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_2044 |
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| Symbol | |
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| ID | 8544426 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | + |
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| Start bp | 2822225 |
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| End bp | 2823784 |
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| Gene Length | 1560 bp |
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| Protein Length | 519 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 646386747 |
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| Product | putative sigma54 specific transcriptional regulator |
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| Protein accession | YP_003266482 |
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| Protein GI | 262195273 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.526812 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATCG ACGCCGCGGC GGCGAGCTGG GACACGCGGG TTTTCGGTCT GACCATCCTC
TACCACCGGG ATCTCGACCG CGTGGGCGAG CGCGCGCTGT GCACCGGCAT CGAGACCGGC
CGCGCCTTTG CGCTGTCGCG CAGCGAGCCG CTGTTCGCGG CCCCGGGCGG ACGCCAGCGC
AGGCCGCTCG ACGATACGCA GGTGTCGCGA TCGCCGCTGC GCTTGGTAGG CGCGGGCGAG
GACGATGAGC CGGGCGCGAT CCTCCTCGAG TGCGCCGGCA GCCGCACCCG CGTGCGCGTC
GACGGCGAGC CGGCGAGTGG CTCGCTGCGG CTGTCGCGGG CCATGCTCGA GCGCGGCGTG
GTGCTGGCGC TGGGCGGCCG CGTGCTGCTG CTCGCGCACC TGCTGGAGCC GCAGAGCGAC
GCCGGGGAGG CGGATTTCGG ACTCATCGGC CACAGCCCGG CCATGCTGCG CGTGCGCCGC
GATATCCGCC GCGTGGCCGA CCTCGAGGTG CCGGTGCTGG TGCGCGGCGA GAGCGGCACC
GGCAAGGAGC TGGTGGCCCG CGCGATCCAC GACGCGGGCG GGCGCGCGAG CGGTCCGTAT
GTGGCCGTCA ACCTGGCCGC GGTGCCGCAG TCGCTGGCCG CGGCCGAGCT GTTTGGCGCG
GTGCGCGGCG CGTTCACGGG TGCCAATCGA GACCGCCGCG GCCACTTTGC GCGCGCGCGC
GGCGGCACGC TGTTCCTCGA CGAGATCGGC GAGACCGTGC CCGAGCTGCA GGTGCTGCTC
TTGCGCGTGC TCGAGACCGG CGAGATTCAG CCGGTGGGCG CCGATGCCGT CCAGCCGGTC
GACGTCCGCG TGGTGTCGGC GACCGACGCC GATCTCGAGG GCGCGATCGC GGCCGAGCGC
TTCCGCGCGC CGCTCCTGTA CCGCCTGGGC GGCTACGTGA TCCGCCTGCC ACCGCTGCGC
GAGCGACGCG AGGACATCGG CCGGCTGCTG GTGTACTTCC TGCGCCGCGA GCTGGTCGCC
CTGGGCCTGG GCGAGGCGCT CGCGCCCGCC GATACGCCGT GGCTGCCGGC GTCTGTGGTC
GAGCGCCTGC TCACCTACGC CTGGCCGGGC AACGTGCGCC AGCTCGCCAA CCTGGTGCGC
CACCTGGTCA TCGCCAACCG CGACCAGACT CGGGCCGCGC ACTTCGAGAT GATCGACGCG
CTGTCCGAGG TCGATGCATC CGCAGCGCCC AAAGCGCCCG CGCCAGCAGC GCCGGCAGCG
CCTGCGCCGA TGAGCGAGGC CCCCGTGCGC CCGGCCGATA TCGGTGACGA TGAGCTGGTG
GCCGCGCTGC GCGCGCACGC GTTTAGCCCC GAGCGGGCGG CGAGCGCGCT CGGCATCCCG
CGCTCGTCGA TCTATCGGCT GATGGACCGC TGCGCGCGGG TGCGCAAGGC CTCGGAGCTG
AGCGCCGAGG AGATCGAAAG CGCGCGCGCG CGCGCGGACG GTGATGTGCG CGCGGCCGCC
GCGCTGCTCG AGGTCTCGGC GCGCGCGCTG CGCCGGCGCA TGAGCGCGCT CGGACTGTGA
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| Protein sequence | MDIDAAAASW DTRVFGLTIL YHRDLDRVGE RALCTGIETG RAFALSRSEP LFAAPGGRQR
RPLDDTQVSR SPLRLVGAGE DDEPGAILLE CAGSRTRVRV DGEPASGSLR LSRAMLERGV
VLALGGRVLL LAHLLEPQSD AGEADFGLIG HSPAMLRVRR DIRRVADLEV PVLVRGESGT
GKELVARAIH DAGGRASGPY VAVNLAAVPQ SLAAAELFGA VRGAFTGANR DRRGHFARAR
GGTLFLDEIG ETVPELQVLL LRVLETGEIQ PVGADAVQPV DVRVVSATDA DLEGAIAAER
FRAPLLYRLG GYVIRLPPLR ERREDIGRLL VYFLRRELVA LGLGEALAPA DTPWLPASVV
ERLLTYAWPG NVRQLANLVR HLVIANRDQT RAAHFEMIDA LSEVDASAAP KAPAPAAPAA
PAPMSEAPVR PADIGDDELV AALRAHAFSP ERAASALGIP RSSIYRLMDR CARVRKASEL
SAEEIESARA RADGDVRAAA ALLEVSARAL RRRMSALGL
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