| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_2028 |
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| Symbol | |
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| ID | 8544410 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | - |
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| Start bp | 2796992 |
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| End bp | 2799874 |
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| Gene Length | 2883 bp |
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| Protein Length | 960 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 646386731 |
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| Product | TonB family protein |
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| Protein accession | YP_003266466 |
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| Protein GI | 262195257 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.38309 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTCCGAG CTTCTCATCG CCTGGTTCAG CCAGCGCTGC TGTGCATCGC GGCGCTGTGC
CTGAGCGGCA TCGCCCCGCC CTCTGAGGCA CGCGCGCAGG CCGCGGCCGC GCCCGGCGTC
GACCAGGTGT CCGACGACAC GGATGCAGGC GCGGGCGCAG GAGCTGGCGT GGCTCCGGCT
CCGGCTCCGG CAGCATCCGC AGCCGACGCC GTGCAGCCGC CGGTGCTCGT GCACTTCGTC
GAGGCCGAGT ACCCGGCCGC CGCGCGCAGC GAAGGCCGCG CCGGCAGCGT CGATCTGCTG
CTCAGCATCG ACGCGCGAGG GCGCGTCACC GCCGCGGAAA TCGCCGCCTC GGCCGGCCCC
GACTTCGACA GCGCCGCGCG CGCCGCGGCC TTGGCGTTTC GCTTCGAACC CGCGCGCCGC
GGCGGCGTGG CCATGCCCGC GCGCATCCGC TACCGCTACG CCTTCGCGCT GCCCGAGGCC
CCGGACGCAG ACGCAGCCTC GGCAGACGCG GACGCCACCG CCGACGCTGC AGTGCCCGCA
GCGCCCCCGG CCCGTGCCGC CGCCAGCGGC GCGCTCGTCG GCAGCCTGCG CATCCCGGGC
CGCGCGCGCG AGCCCGTCGC CGGCGCCAGC ATCACGCTCA CCGCCGCCGA CGGCAGCACG
CGCAGCGCCA CCAGCGACGA GCGCGGCGGC TTCCGCATCG ACGCGCTCGC GCCCGGCGCC
TACGATGTCC GCGCCGCGGC GCCCGGCTTC GAACCCGGCC TGCTGCGCAC CGAAATTGTC
CCCGGACGCG CGGCCGAAAT CGCGCTCGTA CTCGCGCCCA CGGTCGGCGG CGCCGCCGAC
CAGGTCCTCG AGGTCACCGT GCGCGGCAGC CGCGCGGGCG AGCGCTTGCA CAACTCGGCG
CAAGCCGTCC GCGTGGTCGA AACCGAGCAA GCCCAGCAGC AGAGCGCCGA CCTCGGCGAG
GTGCTGGCGC GCACCGAAGG CGTGGACGTA CGCCGCAGCG GCGGCCTGGG CTCCGACGCG
CGGCTGTCGC TCGGCGGACT CAGCGGCGAC CAGATCCGCA CCTTCCTCGA CGGCATCCCG
CTCGCGCTCG CCGGCTATCC CCTGGGCATC GCCAACGTGC CCGTCAACCA GGTCGAGCGC
ATCGAGATCT ACCGCGGCGT CGTGCCCGTG CGCTTCGGCA CCGACGCCCT CGGCGGCGCC
ATCAACCTGG TCAGCGACGG CGCCGAGCGC CGCGCCGATG GCGCCTCGGC CTCGTACCAG
ACCGGCGCCT TCGACACCCA CCGCCTCACG CTCGGCGCCC GCCGCCTGCT GCACCCGGCC
AGCGGCCTGT TCGCGCGCGT CAACGGCTAC TACGACCGCG CCCGCAACGA CTATCCCATC
GACGTCGACG TGCCCGACGC CAGCGGCCGG CTGGTCGCCG GACGCGCGCG CCGTTTTCAC
GACGGCTACC GCGCGCTCGG TGCCGGCGCC GAGATCGGCG TCTCCCGCCA GCCCTGGGCC
GAGCATCTGT CGCTGCGCGG CTTCGTCGGC GAGCACGCGC GCGACCTCCA GCACAACCTG
CTGGCCACCG TGCCCTACGG CGAGGCCACC TACGGCAAGT ACAGCGCCGG CGCGCACCTG
CGCTACGCCC AGCCGCTGTC CGAGCGCGCG CGCGTCGACG CCGTCGCCGG ATATTCGTAC
ATCCGGACCA CCTTCCGCGA TCTCGCCACC TGCCGCTACG ACTGGTACGG CCGCTGCGTG
GCCAACCTGC CCCAGGCCGG CGAGATCGAG GCCCTCGCCA GCGATCAGCG CGTGCGTCAG
AACGTCCTCT TTGCCCACCT GGGCCTGACC TGGACGCCGG CCCCCACCCA CGCCCTGCGC
GTCGCGCTGG CGCCCAGGCA CACCAGCCAA CGCGGCGAAA ATCGCGCCCT CCCGGCCGAG
GACTACGATC CCCTGGCCGC CCGTCGCACC TTGAGCAGCG CGGTTTTCGG CGCTGAGTAC
GAAATCGACG CCTGGGCCGA GCGCCTGACC AATATCGCCT TCATCAAGAG CTACCTGCAG
CGCGCGCGCA GCGACGAGCG CTTGCCCAAT GGCACCATCC GCGAGCTCGA CCGCCTCACG
CCGCGCCTGG GCGTGGGCGA CAGCCTGCGT CTGCAGCTCA CGGACGAGCT GAGCCTCAAA
AGCTCGTACG AACTCGCCAC CCGCCTGCCC CGACCCGAAG AACTTTTTGG CAACGGCGGA
CTCATCGTCG AAAACCTGCA CCTCGATCCC GAGACCAGTC ACAACCTCAA CCTCGACCTG
CAATTCGAAC GCGAAGACCA GGCTCTTGGC CACATGCGCG TGCGCGTGGG CGGCTTCGGT
CGCTTCACCC GCGACCTCAT CGTGCTGCTC GGCACCGGCA GCTACCAGCA GTACGAAAAC
GTCTACGCCG CGCGCTCGCT CGGCGTCGAG ACCACGGCCG GTTGGCAATC GCCCGGCCAG
CGCCTCGCGC TCGAGGGCGC GCTCACCTGG CAGGACTTCC GCAACGCGGC CGACGAGGAC
TCGGACGACC CCTTCGCCGG CGACCGCATC CCCAACCATC CCCACCTGTT CGCCAGCGGC
AGCGCGCGCG TGCAGTGGCC GGCGCTGCTA CAGCCCGGCG ACGCGCTCGC GCTCACCTGG
CACACCCGCT ACGTGCACGC CTTCTTCCGC AGTTGGGAGA GCGCGGGCGC GGCCGACTCC
AAGCTCCAGG TCCCCAGCCA GCTCATCCAC ACCCCCGCGC TCAGCTACCG CGTCGAGCGC
GAGGGCCGGG CCGCGAGCTT CACCATCGAG CTGCAAAACC TCAGCGACGA GCGAGTCTTC
GACTTTTTCG GCGTCCAGCG CCCCGGACGG GCCGCCTACG CAAAGCTGGT ACTCGACATG
TGA
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| Protein sequence | MLRASHRLVQ PALLCIAALC LSGIAPPSEA RAQAAAAPGV DQVSDDTDAG AGAGAGVAPA
PAPAASAADA VQPPVLVHFV EAEYPAAARS EGRAGSVDLL LSIDARGRVT AAEIAASAGP
DFDSAARAAA LAFRFEPARR GGVAMPARIR YRYAFALPEA PDADAASADA DATADAAVPA
APPARAAASG ALVGSLRIPG RAREPVAGAS ITLTAADGST RSATSDERGG FRIDALAPGA
YDVRAAAPGF EPGLLRTEIV PGRAAEIALV LAPTVGGAAD QVLEVTVRGS RAGERLHNSA
QAVRVVETEQ AQQQSADLGE VLARTEGVDV RRSGGLGSDA RLSLGGLSGD QIRTFLDGIP
LALAGYPLGI ANVPVNQVER IEIYRGVVPV RFGTDALGGA INLVSDGAER RADGASASYQ
TGAFDTHRLT LGARRLLHPA SGLFARVNGY YDRARNDYPI DVDVPDASGR LVAGRARRFH
DGYRALGAGA EIGVSRQPWA EHLSLRGFVG EHARDLQHNL LATVPYGEAT YGKYSAGAHL
RYAQPLSERA RVDAVAGYSY IRTTFRDLAT CRYDWYGRCV ANLPQAGEIE ALASDQRVRQ
NVLFAHLGLT WTPAPTHALR VALAPRHTSQ RGENRALPAE DYDPLAARRT LSSAVFGAEY
EIDAWAERLT NIAFIKSYLQ RARSDERLPN GTIRELDRLT PRLGVGDSLR LQLTDELSLK
SSYELATRLP RPEELFGNGG LIVENLHLDP ETSHNLNLDL QFEREDQALG HMRVRVGGFG
RFTRDLIVLL GTGSYQQYEN VYAARSLGVE TTAGWQSPGQ RLALEGALTW QDFRNAADED
SDDPFAGDRI PNHPHLFASG SARVQWPALL QPGDALALTW HTRYVHAFFR SWESAGAADS
KLQVPSQLIH TPALSYRVER EGRAASFTIE LQNLSDERVF DFFGVQRPGR AAYAKLVLDM
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