Gene Hoch_2024 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_2024 
Symbol 
ID8544406 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp2793447 
End bp2793914 
Gene Length468 bp 
Protein Length155 aa 
Translation table11 
GC content71% 
IMG OID646386727 
ProductBiopolymer transport protein ExbD/TolR 
Protein accessionYP_003266462 
Protein GI262195253 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0848] Biopolymer transport protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.34025 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCCGGCT CGAGGCTCCG CCGCGGCGGC ATCATCGAAG GCATCAACGT GACGCCGCTC 
GTCGATATCA CGCTGGTGCT GCTGATTATC TTCATGGTCA CGGCCAAGTT CGCGACCGCG
CCCGCGGTGC CCCTCGACCT GCCCACGGCG TCGCAGAGCG AAGAGCTGCA GACGATTTTC
TCGGTGGTGG TGCCGCGCGA TGGCTCGACG CGCGTCGACG GCGCCGCTGT GGACGATGAG
GTGCTGGCCG AGCGCGCGCG CGCGGCCCTG CGTCAAGCGC CCGAGCTGCG CGCCGTCATC
CAGGCCGACC GCGGCGTGCC GCACGGCCGC GTCATGAGCG TGCTCGACAC GCTCAAATCC
GCCGGGCTCA CCCATGTCGC TTTCGGCGCG GTGTCCGAAC CCGAGAGCGA GGCGTCTGCG
GAAGCCGCTG CTGCGCCGCC CGCCGCCGCG GCGAGCGAGG ACGAGTGA
 
Protein sequence
MAGSRLRRGG IIEGINVTPL VDITLVLLII FMVTAKFATA PAVPLDLPTA SQSEELQTIF 
SVVVPRDGST RVDGAAVDDE VLAERARAAL RQAPELRAVI QADRGVPHGR VMSVLDTLKS
AGLTHVAFGA VSEPESEASA EAAAAPPAAA ASEDE