| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_2005 |
|---|
| Symbol | |
|---|
| ID | 8544387 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 2766962 |
|---|
| End bp | 2768551 |
|---|
| Gene Length | 1590 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 646386708 |
|---|
| Product | phosphoenolpyruvate carboxykinase (ATP) |
|---|
| Protein accession | YP_003266443 |
|---|
| Protein GI | 262195234 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1866] Phosphoenolpyruvate carboxykinase (ATP) |
|---|
| TIGRFAM ID | [TIGR00224] phosphoenolpyruvate carboxykinase (ATP) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.37064 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATCGA CGTTCAATCT CGAGAAACAT CAAATTACTG TCCAGCACGT TTTGCGCAAC
GCCGCGCCGC CGGTTCTCTA CGAAGCCGCG CTGCGCTACG AGAAGGGCTC CGCCATCTCG
CGCACAGGTG CCCTGATCGC GATGTCCGGC GCCAAGACCG GCCGCAGCCC CAACGACAAG
CGCATCGTCG ACGAGCCCGC CACCTCCGAG GACATCTGGT GGGGTCCGGT CAACATCAAG
CTCGATGACC ACACCTTCGA GATCAACCGC GAGCGCGCGA TCGACTATCT CAACACCCGC
GAGCATCTGT ACTGCGTGGA TGCCTTCGCC GGCTGGGATC CCAAGTATCG CATCAAGGTG
CGCGTCATCT GCGCCCGCGC GTATCACGCC CTGTTCATGC ACAACATGCT GATCCGGCCG
ACGCGCGAGG AGCTCGAGAA CTTCGGCGAG CCCGACTACG TCATCTACAA CGGCGGCGCG
TTCCCGGCCA ACCGCTACAC CACCGGCATG ACCTCGACCA CCAGCGTCGA CCTGCACCTG
TCGCGCAAGG AGTTCGTGAT CCTCGGGACC GAGTACGCGG GCGAGATGAA GAAGGGCATC
TTCACGGTGA TGAATTATTT GATGCCCAAG CGCGAGATCC TGTCGATGCA CTGCTCGGCC
ACCGAGGCCA AGGAAGACGG CAGCACGTCG ATCCTCTTCG GCCTCTCGGG CACCGGCAAG
ACCACGCTCA GCGCCGATCC CAAGCGCAAC CTCATCGGCG ACGATGAGCA CTGCTGGAGC
GACGACGGCG TGTTCAACAT CGAGGGCGGC TGCTACGCCA AGGCCATCAA CCTCGATCCC
GAGGCCGAGC CCGACATCTA TCGCGCCATC CGCTCGGGCG CCGTGCTCGA GAACGTGGTC
TACGACCACG ACACCCGCCG CGTCGATTAC ACCGACACCA GCATCACGCA GAACACGCGC
GCCTCGTATC CCATCGAGTA CATCGACAAC GCCAAGATCC CGTGCATGGG CGGGCATCCC
AAGAACGTCA TCTTCCTCAC CTGTGACGCG TTCGGCGTGC TCCCGCCGGT GTCGCGGCTC
ACGCCCGACC AGGCCATGTA CCACTTCATC AGCGGCTACA CGGCCAAGGT CGCCGGCACC
GAGGTCGGCG TGCAGGATCC CGAGGCCACC TTCTCGCCGT GCTTCGGCGG GCCCTTCCTG
GTGTGGCATC CGACCAAGTA CGCCCAGCTT TTGGCCGACA AGCTGCGCAA GCACGGCGCC
CACACCTGGC TGGTCAACAC CGGCTGGACG GGCGGCCCCT TCGGCGTCGG CAAGCGCATG
TCGCTCAAGT ACACGCGCGC CATCGTCGAT GCCATCCACA GCGGCGCGCT CGAGAGCGTC
GACACCACCC AGGACCCGAT CTTCGGCCTG GCGATTCCGA CCTCGTGTCC GGATGTGCCC
GCCGATGTGC TCATCCCCAA GAACACCTGG CAGGACGCCG CCGCCTACGA GCGCACCGCG
ACCAAGCTGG CCCACCTGTT TCGCGACAAC TTCCGCAAGT ACGAAGACGT CGCCAGCAAA
GAGATCCAGG CCGCGGGCCC GCGCATCTGA
|
|---|
| Protein sequence | MASTFNLEKH QITVQHVLRN AAPPVLYEAA LRYEKGSAIS RTGALIAMSG AKTGRSPNDK
RIVDEPATSE DIWWGPVNIK LDDHTFEINR ERAIDYLNTR EHLYCVDAFA GWDPKYRIKV
RVICARAYHA LFMHNMLIRP TREELENFGE PDYVIYNGGA FPANRYTTGM TSTTSVDLHL
SRKEFVILGT EYAGEMKKGI FTVMNYLMPK REILSMHCSA TEAKEDGSTS ILFGLSGTGK
TTLSADPKRN LIGDDEHCWS DDGVFNIEGG CYAKAINLDP EAEPDIYRAI RSGAVLENVV
YDHDTRRVDY TDTSITQNTR ASYPIEYIDN AKIPCMGGHP KNVIFLTCDA FGVLPPVSRL
TPDQAMYHFI SGYTAKVAGT EVGVQDPEAT FSPCFGGPFL VWHPTKYAQL LADKLRKHGA
HTWLVNTGWT GGPFGVGKRM SLKYTRAIVD AIHSGALESV DTTQDPIFGL AIPTSCPDVP
ADVLIPKNTW QDAAAYERTA TKLAHLFRDN FRKYEDVASK EIQAAGPRI
|
|---|
| |