Gene Hoch_1885 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_1885 
Symbol 
ID8544267 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp2594345 
End bp2595538 
Gene Length1194 bp 
Protein Length397 aa 
Translation table11 
GC content73% 
IMG OID646386590 
Productalanine racemase 
Protein accessionYP_003266325 
Protein GI262195116 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0787] Alanine racemase 
TIGRFAM ID[TIGR00492] alanine racemase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.849261 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCCCACA CCGTCCGTCC CACCCGCGTC GAGATCGATC TCGACGCCAT CCACGCCAAC 
GCCCGCGTCT TGCGCGAGGT GTCGCAGGCC GCCCTGTACG CGGTGGTCAA GGCCGACGCC
TACGGCCACG GCGCGCGCGT GGTGGCGCGC TCGCTGGCCG AGGTCGGCGC GGCCGAGGGC
TTCGCGGTCA GTCTGGTGGA GGAGGGCTGC GAATTGCGCG ACGCCGGCAT CGACGCGCCG
ATCCTGGTCA TGGGGCCGGC GCTGCGCGGC GGCGAGGACG AGATCGTCGG CCGCGATCTG
ATGGCCGCGC TGTCGAGCTT CGACGACATC GCGCGCCTGG CTGCTGCGGC CGCGCGTCGC
GGCGCCCGCC TGCCCGTGCA TCTCAAGGTC GACACCGGCA TGGGACGTCT GGGCATCGCG
CCCGCGCGTG TGGGCGAGGC CCTGGATCAC ATCCGCGCCC ACGGCTCGCT CGAGGTGGTC
GGTCTGATGA GCCACCTGGC CTGCGCCGAC GGCGACGACC CGGCCGACCC GGGGTGCATG
AGTTATGAGC AGATCGCGCG CTTCGACGAG GCCGCGGCCG TGCTCCGCGC CCGCGGACTG
CGCCACGTGC GCCAGCACCT GGCCAACAGC TCGGCCACGC TGCTGTTCCC CGAGGCGCGC
CGCGATCTGG TGCGCTGCGG GCTGGCGCTG TACGGCAACA GCCAGCAGCC GGAGCGGGTG
CCGCGGCTGC GTCAGGGCGT TCGTCTGGTC ACCGAGATCG CCCAGGTGCG CGAGGTCGCG
GCCGGTTCCT CGGTGTCGTA CGGGGCGCTG TGGCGGGCGC CTCACGACGC GCGCGTAGCC
GTGATTCCCA TCGGCTACGC CGACGGTGCG CCGCGCCGCC TCACCGGTGT CGGCGAGGTC
TTGATCGCCG GCCGCCGTTG TCCGATGGTG GGCGCGGTAT CCATGGACAT GACAATGATC
GACGTGAGCG CGCTGGGCGG CTCGGTGGGC GAGGGCGACG AGGTGGTGCT GCTGGGCGAG
CAGGGCGATG ACGCGATCTC GGTGCACGAG ATGGCGTCCT GGACCGGCCT GTGCGAGTAC
GAGGTCACCT GTGGGCTGTC CAAGCGGGTG CCCCGGGTCT ACCGTCAGGC CGAGCGCCCG
GTGCGGCGCC GCAGCGCGCG CTGGCAACCG CAGGCCGGAG GCGTCTGGGG ATGA
 
Protein sequence
MSHTVRPTRV EIDLDAIHAN ARVLREVSQA ALYAVVKADA YGHGARVVAR SLAEVGAAEG 
FAVSLVEEGC ELRDAGIDAP ILVMGPALRG GEDEIVGRDL MAALSSFDDI ARLAAAAARR
GARLPVHLKV DTGMGRLGIA PARVGEALDH IRAHGSLEVV GLMSHLACAD GDDPADPGCM
SYEQIARFDE AAAVLRARGL RHVRQHLANS SATLLFPEAR RDLVRCGLAL YGNSQQPERV
PRLRQGVRLV TEIAQVREVA AGSSVSYGAL WRAPHDARVA VIPIGYADGA PRRLTGVGEV
LIAGRRCPMV GAVSMDMTMI DVSALGGSVG EGDEVVLLGE QGDDAISVHE MASWTGLCEY
EVTCGLSKRV PRVYRQAERP VRRRSARWQP QAGGVWG