| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_1818 |
|---|
| Symbol | |
|---|
| ID | 8544200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 2505918 |
|---|
| End bp | 2507696 |
|---|
| Gene Length | 1779 bp |
|---|
| Protein Length | 592 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 646386524 |
|---|
| Product | PEGA domain protein |
|---|
| Protein accession | YP_003266259 |
|---|
| Protein GI | 262195050 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.679089 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGGCGC CGACGCTGCG ATGTTGGGCG ACGCTGCTCG CCGCCTGCCT GTGTGTGGCC
GCGCTGGGCG GGAACGCGGC CCGCGCTGAA GCGCCCGCGC CGGCGCCCGC GCCGATCGTG
GGCGAGGCCG ACGAGCCGCA GGAGCTGCTC GAGATCGAGT CGTGCATGCA GCCGCTCGAC
CTCGACGCGC GCGAGGCCGA GAACCGCGCT GCCGACCACT ACGACCGCGG CATTCAGCTC
TACGAACAGG GCGACTACGA GGCCGCGATC GAGGAGTTCG TCAGCGCCTA CTGTCTCAAG
CCCTACTACC GGGTGCTCAA GGACATCGCG CAGTCGTTCG AGCGCATGGT CAATTACGAA
AAGGCCGTGA TTTATCTCGA GCGCTATCTG GCCGGGATGC CGGCCGACGA GGTCGAAGAG
CGCCGGGTCC AGCGCGGCCG CGTCGAGGTG CTGCGGCGGC TGCCGGCGCG CATTCGCGTG
GCCACCTCGC CGGCCGGGGC CACGGTCACC CTGCGCGACG CCGGGCGCGT GGAGGCGCGC
GCGCTGGCCG ACGACGACAC GCCCATCGCC ATTCGCAAGG GCCGTTACCT GATGTCCGTG
GAGCACGATG GCTACGAGAC CATCACGCGG CCCATCGCGG TTGAAATCGG ACAGCCGTAC
AGTTTTTATT TTCAGCTCCA GCCCAAGACC GGGTCGCTGC GCATCAACGC CACGCCGGGT
GACGCGCGCA TCTTCGTCGA CAAGCGCTGG GTGGGCGTGG GCAGCTACGT GGGCGAGCTG
CCGCTCGGCG TCTACCAGGT CGAGGTCGAA CTCGATGGCT ATGTGCGCCA GACGCAGGAG
ATCACCATCG ACGATATCGG CGCCCACCGG ATGGCGATCA CGCTCGAGCC GCAGCCGCGT
TCGGGTCGCG GCGAGATGAT CGCGGCGGCT TCGGCCGGCG GTTCGCTGGC GGTCGGCTTG
GTCGCCGGTT CGCTGTTTCG CGGCCAGCGG GGCCTGGCCG CGGGGACCGG GTTGGCGCTC
GGCGGCGGGC TGGGCTTCGC CGGCACCTAC CTCAGTGTGC CCGGCGATCT CCCGGTCGGT
CACAGCTCGT TCATCATCGG CAGCAGTTTG ATCTCGGCGT TCGAGGCCGG CCTGAGCGCG
AGCCTGGTGG AGCGCCTGTT CCTCGACGAG TCGTGCAGCG ACGACGATCG TATGGAGGGG
GCTGCGGAGG ATGGGTTTGT GGGGCGAGTA AACGTCGATA GCTGCCGTTC GCGGGTGATC
CTCGGCGCCA GCATCGTGGG CGGCATCAGC GGCGCGCTGT TCGCCCTGGC CTCGGCCGAC
TATCTGCTGC TCGACGAAGG CGATGTGGCC GTGGTCCACT CGGGCGCGCT GTGGGGCACG
ATCGCGGGCG GGCTGCTGTG GTTCGCGTTC GACCGCGCGG GCGATCGCGG CGACGTCCTC
ACCTTGGCCA CGCTCAACAT GGGCCTGGCC ACCGGCGGCT TCCTGGCCGC GCGCGGCACC
TACAGCCGCA GCCACGTGAG CCTGGTCGAT CTCGGCGGGT TGGGCGGCCT GCTGGCCGGC
GCGACCAGCT CGCTGGTGTT TTACCGGGAT AGCTTCGAGG AGCGCGCGCC GCACTTCGCG
CTCGTGGGGA CGGTCGTTGG CCTGGCGCTG AGCAGCTATC TCACGCGCAA CATGGATGAT
CCCGACATCC GCGCGCCGCA GATCAAGCCG CTCTTCGGCC GCACCGAAGA CGCCGCCGGC
CGCTCCGTCG CCACCGTCGG CGCCTCGCTG CGCTGGTAG
|
|---|
| Protein sequence | MPAPTLRCWA TLLAACLCVA ALGGNAARAE APAPAPAPIV GEADEPQELL EIESCMQPLD
LDAREAENRA ADHYDRGIQL YEQGDYEAAI EEFVSAYCLK PYYRVLKDIA QSFERMVNYE
KAVIYLERYL AGMPADEVEE RRVQRGRVEV LRRLPARIRV ATSPAGATVT LRDAGRVEAR
ALADDDTPIA IRKGRYLMSV EHDGYETITR PIAVEIGQPY SFYFQLQPKT GSLRINATPG
DARIFVDKRW VGVGSYVGEL PLGVYQVEVE LDGYVRQTQE ITIDDIGAHR MAITLEPQPR
SGRGEMIAAA SAGGSLAVGL VAGSLFRGQR GLAAGTGLAL GGGLGFAGTY LSVPGDLPVG
HSSFIIGSSL ISAFEAGLSA SLVERLFLDE SCSDDDRMEG AAEDGFVGRV NVDSCRSRVI
LGASIVGGIS GALFALASAD YLLLDEGDVA VVHSGALWGT IAGGLLWFAF DRAGDRGDVL
TLATLNMGLA TGGFLAARGT YSRSHVSLVD LGGLGGLLAG ATSSLVFYRD SFEERAPHFA
LVGTVVGLAL SSYLTRNMDD PDIRAPQIKP LFGRTEDAAG RSVATVGASL RW
|
|---|
| |