| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_1761 |
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| Symbol | |
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| ID | 8544143 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | - |
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| Start bp | 2432234 |
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| End bp | 2433913 |
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| Gene Length | 1680 bp |
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| Protein Length | 559 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 646386468 |
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| Product | thiamine pyrophosphate protein TPP binding domain protein |
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| Protein accession | YP_003266203 |
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| Protein GI | 262194994 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.15439 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00802646 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCATGC GGGGCAAGCA CGCGTTCATC GAGCAGCTTC GGCTCGAGGG CGTCCCATTC
GTGTTCGGCA ATCCCGGCAG CACCGAGTTG GCCCTGCTCG ACGGCTTCCG CGACGCGCCC
GTCACCTACA TGCTGGGGCT GCACGAGGCC GTGAGCATGG CCATGGCCAC CGGCTACGCC
AAGGCCAGCG GCCGCCCCGC GGTGGTCAAC CTGCACTGCG CCGCCGGGCT CGGCAACGCC
ATGGGCATGA TGCTCAACGC GGCGCGCGAA CGCGTCCCAC TCGTCGTCAC GGCCGGCCAG
CAGGACACGC GTCATCTATT CGCGGATCCG CTGATCAGCG GCGACCTGCT CGAGCTGGCA
CGACCCTTCG CCAAGTGGGC CACCGAGGTC CGGCAGGCCG ACGAACTTCC CATCGCGCTG
CGCCGGGCCT TCAAGACTGC ACTCGAGGCG CCCGCCGGCC CGGTGGTGGT GTCGCTGCCG
CAAAACCTCC TCGACCAGCC GGTGTCGCTG CCGATCCTGC CGACCGTGCA CACCGCGCCG
CCCTCGCCCT CGCTGCGCGC GCTCGAGAGC GCGGCCGATG TGCTGGCGAA GGCCTCGAAT
CCGCTGATCC TGTGCGGTGA CGGGCTGGCG GCCAGCGGCG GTCACGAACA GGTCGCGCGC
CTGGCCGAGA TGCTGGGTGC GCCGGTCATG GCCAACACCT TGTCGGTGTG GAGCTTTCCC
AACAATCACC CGCACTATCG CGGCGGACCG ATTCTCGCCC AGGTGGGCGA GGTGCTGCGC
GACCGCGACT GCGTGCTCGC GCTGGGCGCC GGGCAGCTCT TCCGACAGCT GCCCTACGAG
GGGCTCACGC CGCTGCCTGC GGAGTGCGCG CTGATTCAGA TCGACGTGGC GCCCGATCTC
ATCGCCAAGA ATCACCCGGT GGCCCTGGGC ATCCACGGCG ACCCGCGCGA GGCCGCGACG
CATCTGCTCA CGCTGTTGGA AGAGCGCCTG GACGAAGACC GTCGCCAGGC GGCTCGCGCG
CGCGCCGCTG CGCTGGCCGA GCGACACGCG GCGCAGCGGG CGCAGGCGCG GGAACAGATG
CACGCGCACT GGGACGACGA TCCGATTTCC CCGATGCGCG TGGCCGGCGA ATTGGCCCGC
CACCTCACGC CGCAGAGCGT GCTGGTGGGC GCGACCGGTA CCGCCGTGCG CCAGGCCTTC
GGCCAGCTTC TCGACTTCGG CGAGCCGCTG TCGTTCTTCG GCGGCAGCGA GGCGCTCGGC
TTCTCGATTC CGGGCGCGTT GGGCATTCAG CTCGCGCTGC CCGAGCGCCA GGTGGTGTGC
GTGGTGCGCG AGGGTGAGGG CATGTACACC ATCCAGGGGC TGTGGACCGC CAAACACTAT
GATATCCCGG TCAAATACCT GGTTCTCAAC GATCTCGAAT ATCGCGCGCT GAAAAAAGGA
ATGGTCAAGT ACTGGCGCGG CCACGGCAGC CCCGGCCCCT TTATCGCCAT GGACCTCGAC
GACCCGCCCC TGGATTACGC CAAGCTCGCG GCCGCGTTCG AGATCCCGGC GCGTTCGATC
GCCAAACCCA GCGACCTGCC CGCGGCCATG GATGAACTCT TTTCCACGCC TGGTGTGGCG
TGTCTCGATG TTAGGATTGC CCGCTTTCAC GCAGCCGAGG GCGCACCGAC GCCGCGATGA
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| Protein sequence | MSMRGKHAFI EQLRLEGVPF VFGNPGSTEL ALLDGFRDAP VTYMLGLHEA VSMAMATGYA
KASGRPAVVN LHCAAGLGNA MGMMLNAARE RVPLVVTAGQ QDTRHLFADP LISGDLLELA
RPFAKWATEV RQADELPIAL RRAFKTALEA PAGPVVVSLP QNLLDQPVSL PILPTVHTAP
PSPSLRALES AADVLAKASN PLILCGDGLA ASGGHEQVAR LAEMLGAPVM ANTLSVWSFP
NNHPHYRGGP ILAQVGEVLR DRDCVLALGA GQLFRQLPYE GLTPLPAECA LIQIDVAPDL
IAKNHPVALG IHGDPREAAT HLLTLLEERL DEDRRQAARA RAAALAERHA AQRAQAREQM
HAHWDDDPIS PMRVAGELAR HLTPQSVLVG ATGTAVRQAF GQLLDFGEPL SFFGGSEALG
FSIPGALGIQ LALPERQVVC VVREGEGMYT IQGLWTAKHY DIPVKYLVLN DLEYRALKKG
MVKYWRGHGS PGPFIAMDLD DPPLDYAKLA AAFEIPARSI AKPSDLPAAM DELFSTPGVA
CLDVRIARFH AAEGAPTPR
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